Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00395 and LRK53_RS00400 are separated by 287 nucleotides LRK53_RS00400 and LRK53_RS00405 are separated by 1 nucleotides LRK53_RS00405 and LRK53_RS00410 are separated by 3 nucleotides
LRK53_RS00395: LRK53_RS00395 - SDR family oxidoreductase, at 89,549 to 90,313
_RS00395
LRK53_RS00400: LRK53_RS00400 - amidohydrolase family protein, at 90,601 to 91,839
_RS00400
LRK53_RS00405: LRK53_RS00405 - trimeric intracellular cation channel family protein, at 91,841 to 92,536
_RS00405
LRK53_RS00410: LRK53_RS00410 - M20 family metallopeptidase, at 92,540 to 93,814
_RS00410
Position (kb) 90
91
92 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 89.748 kb on - strand, within LRK53_RS00395 at 89.748 kb on - strand, within LRK53_RS00395 at 89.809 kb on - strand, within LRK53_RS00395 at 89.872 kb on - strand, within LRK53_RS00395 at 89.872 kb on - strand, within LRK53_RS00395 at 89.952 kb on + strand, within LRK53_RS00395 at 89.953 kb on - strand, within LRK53_RS00395 at 89.953 kb on - strand, within LRK53_RS00395 at 89.953 kb on - strand, within LRK53_RS00395 at 90.077 kb on + strand, within LRK53_RS00395 at 90.077 kb on + strand, within LRK53_RS00395 at 90.078 kb on - strand, within LRK53_RS00395 at 90.078 kb on - strand, within LRK53_RS00395 at 90.385 kb on + strand at 90.385 kb on + strand at 90.386 kb on - strand at 90.386 kb on - strand at 90.386 kb on - strand at 90.386 kb on - strand at 90.386 kb on - strand at 90.641 kb on + strand at 90.641 kb on + strand at 90.642 kb on - strand at 90.792 kb on + strand, within LRK53_RS00400 at 90.893 kb on + strand, within LRK53_RS00400 at 91.094 kb on + strand, within LRK53_RS00400 at 91.094 kb on + strand, within LRK53_RS00400 at 91.094 kb on + strand, within LRK53_RS00400 at 91.094 kb on + strand, within LRK53_RS00400 at 91.095 kb on - strand, within LRK53_RS00400 at 91.095 kb on - strand, within LRK53_RS00400 at 91.095 kb on - strand, within LRK53_RS00400 at 91.262 kb on + strand, within LRK53_RS00400 at 91.263 kb on - strand, within LRK53_RS00400 at 91.385 kb on + strand, within LRK53_RS00400 at 91.386 kb on - strand, within LRK53_RS00400 at 91.547 kb on + strand, within LRK53_RS00400 at 91.556 kb on + strand, within LRK53_RS00400 at 91.556 kb on + strand, within LRK53_RS00400 at 91.556 kb on + strand, within LRK53_RS00400 at 91.556 kb on + strand, within LRK53_RS00400 at 91.556 kb on + strand, within LRK53_RS00400 at 91.557 kb on - strand, within LRK53_RS00400 at 91.557 kb on - strand, within LRK53_RS00400 at 91.557 kb on - strand, within LRK53_RS00400 at 91.557 kb on - strand, within LRK53_RS00400 at 91.557 kb on - strand, within LRK53_RS00400 at 91.557 kb on - strand, within LRK53_RS00400 at 91.557 kb on - strand, within LRK53_RS00400 at 91.557 kb on - strand, within LRK53_RS00400 at 91.557 kb on - strand, within LRK53_RS00400 at 91.557 kb on - strand, within LRK53_RS00400 at 91.557 kb on - strand, within LRK53_RS00400 at 91.557 kb on - strand, within LRK53_RS00400 at 91.795 kb on + strand at 91.796 kb on - strand at 91.796 kb on - strand at 91.825 kb on + strand at 91.825 kb on + strand at 91.825 kb on + strand at 91.825 kb on + strand at 91.826 kb on - strand at 91.826 kb on - strand at 92.052 kb on + strand, within LRK53_RS00405 at 92.052 kb on + strand, within LRK53_RS00405 at 92.052 kb on + strand, within LRK53_RS00405 at 92.052 kb on + strand, within LRK53_RS00405 at 92.053 kb on - strand, within LRK53_RS00405 at 92.685 kb on + strand, within LRK53_RS00410 at 92.685 kb on + strand, within LRK53_RS00410 at 92.685 kb on + strand, within LRK53_RS00410 at 92.685 kb on + strand, within LRK53_RS00410 at 92.686 kb on - strand, within LRK53_RS00410 at 92.686 kb on - strand, within LRK53_RS00410 at 92.686 kb on - strand, within LRK53_RS00410 at 92.686 kb on - strand, within LRK53_RS00410 at 92.686 kb on - strand, within LRK53_RS00410 at 92.811 kb on + strand, within LRK53_RS00410 at 92.811 kb on + strand, within LRK53_RS00410 at 92.811 kb on + strand, within LRK53_RS00410 at 92.811 kb on + strand, within LRK53_RS00410 at 92.812 kb on - strand, within LRK53_RS00410
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 89,748 - LRK53_RS00395 0.26 -0.0 89,748 - LRK53_RS00395 0.26 +0.5 89,809 - LRK53_RS00395 0.34 +1.6 89,872 - LRK53_RS00395 0.42 +0.4 89,872 - LRK53_RS00395 0.42 +0.5 89,952 + LRK53_RS00395 0.53 -1.0 89,953 - LRK53_RS00395 0.53 -0.5 89,953 - LRK53_RS00395 0.53 -0.5 89,953 - LRK53_RS00395 0.53 -2.4 90,077 + LRK53_RS00395 0.69 -0.7 90,077 + LRK53_RS00395 0.69 -1.2 90,078 - LRK53_RS00395 0.69 -0.5 90,078 - LRK53_RS00395 0.69 -2.6 90,385 + +0.6 90,385 + -0.5 90,386 - -1.0 90,386 - -0.5 90,386 - -0.6 90,386 - +1.5 90,386 - -3.1 90,641 + -1.4 90,641 + -1.9 90,642 - -0.0 90,792 + LRK53_RS00400 0.15 -1.1 90,893 + LRK53_RS00400 0.24 -0.0 91,094 + LRK53_RS00400 0.40 -0.0 91,094 + LRK53_RS00400 0.40 -0.7 91,094 + LRK53_RS00400 0.40 -0.0 91,094 + LRK53_RS00400 0.40 -0.4 91,095 - LRK53_RS00400 0.40 -0.0 91,095 - LRK53_RS00400 0.40 -1.3 91,095 - LRK53_RS00400 0.40 -1.3 91,262 + LRK53_RS00400 0.53 -1.8 91,263 - LRK53_RS00400 0.53 -0.9 91,385 + LRK53_RS00400 0.63 +0.2 91,386 - LRK53_RS00400 0.63 -0.7 91,547 + LRK53_RS00400 0.76 -1.3 91,556 + LRK53_RS00400 0.77 -0.9 91,556 + LRK53_RS00400 0.77 +0.0 91,556 + LRK53_RS00400 0.77 -0.7 91,556 + LRK53_RS00400 0.77 +0.5 91,556 + LRK53_RS00400 0.77 -2.0 91,557 - LRK53_RS00400 0.77 -0.2 91,557 - LRK53_RS00400 0.77 -0.0 91,557 - LRK53_RS00400 0.77 -1.7 91,557 - LRK53_RS00400 0.77 -1.6 91,557 - LRK53_RS00400 0.77 +0.3 91,557 - LRK53_RS00400 0.77 +0.4 91,557 - LRK53_RS00400 0.77 -1.4 91,557 - LRK53_RS00400 0.77 +1.2 91,557 - LRK53_RS00400 0.77 -0.5 91,557 - LRK53_RS00400 0.77 -1.5 91,557 - LRK53_RS00400 0.77 +0.2 91,557 - LRK53_RS00400 0.77 -0.0 91,795 + -1.6 91,796 - -0.7 91,796 - +0.8 91,825 + +0.4 91,825 + +1.4 91,825 + -0.5 91,825 + -0.0 91,826 - -0.5 91,826 - -0.5 92,052 + LRK53_RS00405 0.30 -1.7 92,052 + LRK53_RS00405 0.30 -1.1 92,052 + LRK53_RS00405 0.30 -0.7 92,052 + LRK53_RS00405 0.30 -0.4 92,053 - LRK53_RS00405 0.30 -2.0 92,685 + LRK53_RS00410 0.11 -0.5 92,685 + LRK53_RS00410 0.11 -0.6 92,685 + LRK53_RS00410 0.11 -1.3 92,685 + LRK53_RS00410 0.11 -0.9 92,686 - LRK53_RS00410 0.11 +0.9 92,686 - LRK53_RS00410 0.11 -0.2 92,686 - LRK53_RS00410 0.11 -1.6 92,686 - LRK53_RS00410 0.11 +0.7 92,686 - LRK53_RS00410 0.11 -0.2 92,811 + LRK53_RS00410 0.21 -0.2 92,811 + LRK53_RS00410 0.21 -0.5 92,811 + LRK53_RS00410 0.21 +1.4 92,811 + LRK53_RS00410 0.21 +1.9 92,812 - LRK53_RS00410 0.21 +1.0
Or see this region's nucleotide sequence