Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS00380

Experiment: Biofilm; Day2; SGW; pH7

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS00370 and LRK53_RS00375 are separated by 35 nucleotidesLRK53_RS00375 and LRK53_RS00380 are separated by 48 nucleotidesLRK53_RS00380 and LRK53_RS00385 are separated by 51 nucleotides LRK53_RS00370: LRK53_RS00370 - DNA starvation/stationary phase protection protein, at 85,029 to 85,574 _RS00370 LRK53_RS00375: LRK53_RS00375 - NAD(P)-dependent oxidoreductase, at 85,610 to 86,221 _RS00375 LRK53_RS00380: LRK53_RS00380 - DUF308 domain-containing protein, at 86,270 to 86,812 _RS00380 LRK53_RS00385: LRK53_RS00385 - aldehyde dehydrogenase family protein, at 86,864 to 88,348 _RS00385 Position (kb) 86 87Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 85.378 kb on + strand, within LRK53_RS00370at 85.378 kb on + strand, within LRK53_RS00370at 85.379 kb on - strand, within LRK53_RS00370at 85.432 kb on + strand, within LRK53_RS00370at 85.432 kb on + strand, within LRK53_RS00370at 85.432 kb on + strand, within LRK53_RS00370at 85.432 kb on + strand, within LRK53_RS00370at 85.432 kb on + strand, within LRK53_RS00370at 85.433 kb on - strand, within LRK53_RS00370at 85.433 kb on - strand, within LRK53_RS00370at 85.433 kb on - strand, within LRK53_RS00370at 85.433 kb on - strand, within LRK53_RS00370at 85.433 kb on - strand, within LRK53_RS00370at 85.533 kb on + strandat 85.533 kb on + strandat 85.533 kb on + strandat 85.533 kb on + strandat 85.533 kb on + strandat 85.533 kb on + strandat 85.533 kb on + strandat 85.533 kb on + strandat 85.533 kb on + strandat 85.533 kb on + strandat 85.533 kb on + strandat 85.534 kb on - strandat 85.534 kb on - strandat 85.534 kb on - strandat 85.534 kb on - strandat 85.534 kb on - strandat 85.534 kb on - strandat 85.534 kb on - strandat 85.534 kb on - strandat 85.534 kb on - strandat 85.534 kb on - strandat 85.534 kb on - strandat 85.534 kb on - strandat 85.534 kb on - strandat 85.534 kb on - strandat 85.614 kb on + strandat 85.615 kb on - strandat 85.681 kb on - strand, within LRK53_RS00375at 85.681 kb on - strand, within LRK53_RS00375at 85.940 kb on + strand, within LRK53_RS00375at 85.941 kb on - strand, within LRK53_RS00375at 85.941 kb on - strand, within LRK53_RS00375at 85.941 kb on - strand, within LRK53_RS00375at 86.283 kb on + strandat 86.283 kb on + strandat 86.283 kb on + strandat 86.283 kb on + strandat 86.284 kb on - strandat 86.631 kb on + strand, within LRK53_RS00380at 86.806 kb on + strandat 86.807 kb on - strandat 86.844 kb on + strandat 86.844 kb on + strandat 86.844 kb on + strandat 86.844 kb on + strandat 86.844 kb on + strandat 86.844 kb on + strandat 86.845 kb on - strandat 86.845 kb on - strandat 86.845 kb on - strandat 86.857 kb on + strandat 86.857 kb on + strandat 86.857 kb on + strandat 86.857 kb on + strandat 86.857 kb on + strandat 86.857 kb on + strandat 86.858 kb on - strandat 86.858 kb on - strandat 86.858 kb on - strandat 86.865 kb on + strandat 86.865 kb on + strandat 86.866 kb on - strandat 86.874 kb on + strandat 86.875 kb on - strandat 86.986 kb on + strandat 86.987 kb on - strandat 86.987 kb on - strandat 86.987 kb on - strandat 86.987 kb on - strandat 87.056 kb on + strand, within LRK53_RS00385at 87.056 kb on + strand, within LRK53_RS00385at 87.056 kb on + strand, within LRK53_RS00385at 87.056 kb on + strand, within LRK53_RS00385at 87.056 kb on + strand, within LRK53_RS00385at 87.056 kb on + strand, within LRK53_RS00385at 87.057 kb on - strand, within LRK53_RS00385at 87.057 kb on - strand, within LRK53_RS00385at 87.057 kb on - strand, within LRK53_RS00385at 87.057 kb on - strand, within LRK53_RS00385at 87.103 kb on - strand, within LRK53_RS00385at 87.631 kb on + strand, within LRK53_RS00385at 87.678 kb on + strand, within LRK53_RS00385at 87.678 kb on + strand, within LRK53_RS00385at 87.678 kb on + strand, within LRK53_RS00385at 87.678 kb on + strand, within LRK53_RS00385at 87.679 kb on - strand, within LRK53_RS00385at 87.679 kb on - strand, within LRK53_RS00385at 87.679 kb on - strand, within LRK53_RS00385at 87.679 kb on - strand, within LRK53_RS00385at 87.679 kb on - strand, within LRK53_RS00385

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
remove
85,378 + LRK53_RS00370 0.64 +0.5
85,378 + LRK53_RS00370 0.64 -0.8
85,379 - LRK53_RS00370 0.64 -1.5
85,432 + LRK53_RS00370 0.74 -0.8
85,432 + LRK53_RS00370 0.74 -0.5
85,432 + LRK53_RS00370 0.74 -0.8
85,432 + LRK53_RS00370 0.74 -2.9
85,432 + LRK53_RS00370 0.74 -0.4
85,433 - LRK53_RS00370 0.74 -0.9
85,433 - LRK53_RS00370 0.74 -2.0
85,433 - LRK53_RS00370 0.74 -0.1
85,433 - LRK53_RS00370 0.74 +1.7
85,433 - LRK53_RS00370 0.74 -1.3
85,533 + -1.5
85,533 + +1.1
85,533 + +0.4
85,533 + +0.5
85,533 + -0.8
85,533 + -1.5
85,533 + +0.2
85,533 + +0.2
85,533 + -0.1
85,533 + -1.6
85,533 + +0.2
85,534 - -1.2
85,534 - +0.1
85,534 - -0.1
85,534 - +0.6
85,534 - -0.4
85,534 - -0.5
85,534 - -2.0
85,534 - +0.8
85,534 - -1.7
85,534 - +1.8
85,534 - -0.6
85,534 - -2.6
85,534 - +2.8
85,534 - -2.1
85,614 + -0.8
85,615 - -0.1
85,681 - LRK53_RS00375 0.12 -0.6
85,681 - LRK53_RS00375 0.12 +1.2
85,940 + LRK53_RS00375 0.54 +1.2
85,941 - LRK53_RS00375 0.54 -1.7
85,941 - LRK53_RS00375 0.54 +0.4
85,941 - LRK53_RS00375 0.54 -1.3
86,283 + +0.6
86,283 + +1.7
86,283 + -1.0
86,283 + +1.8
86,284 - -1.1
86,631 + LRK53_RS00380 0.66 +0.4
86,806 + +0.3
86,807 - -0.8
86,844 + -2.4
86,844 + +0.4
86,844 + -0.2
86,844 + -0.3
86,844 + -0.7
86,844 + -0.6
86,845 - +0.3
86,845 - +0.6
86,845 - -2.9
86,857 + -1.4
86,857 + -1.4
86,857 + +0.7
86,857 + -0.9
86,857 + -0.5
86,857 + -1.6
86,858 - +1.0
86,858 - -0.5
86,858 - -2.1
86,865 + +0.4
86,865 + +0.3
86,866 - -0.2
86,874 + +2.2
86,875 - -1.5
86,986 + -1.7
86,987 - -0.5
86,987 - -1.8
86,987 - -0.5
86,987 - -0.5
87,056 + LRK53_RS00385 0.13 -1.3
87,056 + LRK53_RS00385 0.13 +0.1
87,056 + LRK53_RS00385 0.13 +1.0
87,056 + LRK53_RS00385 0.13 -1.0
87,056 + LRK53_RS00385 0.13 +0.7
87,056 + LRK53_RS00385 0.13 +0.8
87,057 - LRK53_RS00385 0.13 -0.3
87,057 - LRK53_RS00385 0.13 +0.0
87,057 - LRK53_RS00385 0.13 +0.1
87,057 - LRK53_RS00385 0.13 -0.1
87,103 - LRK53_RS00385 0.16 -0.2
87,631 + LRK53_RS00385 0.52 +0.2
87,678 + LRK53_RS00385 0.55 -0.9
87,678 + LRK53_RS00385 0.55 +0.9
87,678 + LRK53_RS00385 0.55 -1.2
87,678 + LRK53_RS00385 0.55 -0.3
87,679 - LRK53_RS00385 0.55 -0.3
87,679 - LRK53_RS00385 0.55 +0.8
87,679 - LRK53_RS00385 0.55 +0.6
87,679 - LRK53_RS00385 0.55 +0.1
87,679 - LRK53_RS00385 0.55 +1.0

Or see this region's nucleotide sequence