Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS00150

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS00140 and LRK53_RS00145 are separated by 153 nucleotidesLRK53_RS00145 and LRK53_RS00150 are separated by 10 nucleotidesLRK53_RS00150 and LRK53_RS00155 overlap by 4 nucleotidesLRK53_RS00155 and LRK53_RS00160 are separated by 101 nucleotides LRK53_RS00140: LRK53_RS00140 - class 1 fructose-bisphosphatase, at 39,104 to 40,135 _RS00140 LRK53_RS00145: LRK53_RS00145 - DJ-1/PfpI family protein, at 40,289 to 40,900 _RS00145 LRK53_RS00150: LRK53_RS00150 - hypothetical protein, at 40,911 to 41,099 _RS00150 LRK53_RS00155: LRK53_RS00155 - GFA family protein, at 41,096 to 41,500 _RS00155 LRK53_RS00160: LRK53_RS00160 - YafY family transcriptional regulator, at 41,602 to 42,306 _RS00160 Position (kb) 40 41 42Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 39.949 kb on + strand, within LRK53_RS00140at 39.949 kb on + strand, within LRK53_RS00140at 39.949 kb on + strand, within LRK53_RS00140at 39.949 kb on + strand, within LRK53_RS00140at 39.950 kb on - strand, within LRK53_RS00140at 39.950 kb on - strand, within LRK53_RS00140at 40.264 kb on + strandat 40.264 kb on + strandat 40.264 kb on + strandat 40.265 kb on - strandat 40.265 kb on - strandat 40.265 kb on - strandat 40.304 kb on + strandat 40.305 kb on - strandat 40.305 kb on - strandat 40.563 kb on - strand, within LRK53_RS00145at 40.563 kb on - strand, within LRK53_RS00145at 40.563 kb on - strand, within LRK53_RS00145at 40.563 kb on - strand, within LRK53_RS00145at 40.563 kb on - strand, within LRK53_RS00145at 40.706 kb on + strand, within LRK53_RS00145at 40.808 kb on + strand, within LRK53_RS00145at 40.808 kb on + strand, within LRK53_RS00145at 40.808 kb on + strand, within LRK53_RS00145at 40.808 kb on + strand, within LRK53_RS00145at 40.808 kb on + strand, within LRK53_RS00145at 40.808 kb on + strand, within LRK53_RS00145at 40.809 kb on - strand, within LRK53_RS00145at 40.809 kb on - strand, within LRK53_RS00145at 40.809 kb on - strand, within LRK53_RS00145at 40.809 kb on - strand, within LRK53_RS00145at 40.809 kb on - strand, within LRK53_RS00145at 40.809 kb on - strand, within LRK53_RS00145at 40.809 kb on - strand, within LRK53_RS00145at 40.809 kb on - strand, within LRK53_RS00145at 40.809 kb on - strand, within LRK53_RS00145at 40.809 kb on - strand, within LRK53_RS00145at 40.944 kb on + strand, within LRK53_RS00150at 40.957 kb on - strand, within LRK53_RS00150at 40.957 kb on - strand, within LRK53_RS00150at 40.986 kb on + strand, within LRK53_RS00150at 40.986 kb on + strand, within LRK53_RS00150at 40.986 kb on + strand, within LRK53_RS00150at 40.986 kb on + strand, within LRK53_RS00150at 40.986 kb on + strand, within LRK53_RS00150at 40.986 kb on + strand, within LRK53_RS00150at 40.986 kb on + strand, within LRK53_RS00150at 40.986 kb on + strand, within LRK53_RS00150at 40.986 kb on + strand, within LRK53_RS00150at 40.986 kb on + strand, within LRK53_RS00150at 40.987 kb on - strand, within LRK53_RS00150at 40.987 kb on - strand, within LRK53_RS00150at 40.987 kb on - strand, within LRK53_RS00150at 40.987 kb on - strand, within LRK53_RS00150at 41.108 kb on + strandat 41.108 kb on + strandat 41.108 kb on + strandat 41.108 kb on + strandat 41.108 kb on + strandat 41.108 kb on + strandat 41.108 kb on + strandat 41.108 kb on + strandat 41.108 kb on + strandat 41.108 kb on + strandat 41.108 kb on + strandat 41.108 kb on + strandat 41.108 kb on + strandat 41.108 kb on + strandat 41.108 kb on + strandat 41.109 kb on - strandat 41.109 kb on - strandat 41.109 kb on - strandat 41.109 kb on - strandat 41.109 kb on - strandat 41.109 kb on - strandat 41.109 kb on - strandat 41.109 kb on - strandat 41.109 kb on - strandat 41.109 kb on - strandat 41.136 kb on + strandat 41.136 kb on + strandat 41.136 kb on + strandat 41.136 kb on + strandat 41.198 kb on - strand, within LRK53_RS00155at 41.276 kb on + strand, within LRK53_RS00155at 41.276 kb on + strand, within LRK53_RS00155at 41.276 kb on + strand, within LRK53_RS00155at 41.276 kb on + strand, within LRK53_RS00155at 41.277 kb on - strand, within LRK53_RS00155at 41.372 kb on + strand, within LRK53_RS00155at 41.372 kb on + strand, within LRK53_RS00155at 41.372 kb on + strand, within LRK53_RS00155at 41.372 kb on + strand, within LRK53_RS00155at 41.372 kb on + strand, within LRK53_RS00155at 41.372 kb on + strand, within LRK53_RS00155at 41.372 kb on + strand, within LRK53_RS00155at 41.373 kb on - strand, within LRK53_RS00155at 41.373 kb on - strand, within LRK53_RS00155at 41.373 kb on - strand, within LRK53_RS00155at 41.373 kb on - strand, within LRK53_RS00155at 41.546 kb on + strandat 41.546 kb on + strandat 41.547 kb on - strandat 41.547 kb on - strandat 41.547 kb on - strandat 41.593 kb on + strandat 41.593 kb on + strandat 41.593 kb on + strandat 41.713 kb on + strand, within LRK53_RS00160at 41.776 kb on + strand, within LRK53_RS00160at 41.777 kb on - strand, within LRK53_RS00160at 41.777 kb on - strand, within LRK53_RS00160at 41.777 kb on - strand, within LRK53_RS00160at 41.777 kb on - strand, within LRK53_RS00160at 41.777 kb on - strand, within LRK53_RS00160at 41.971 kb on + strand, within LRK53_RS00160at 41.971 kb on + strand, within LRK53_RS00160at 41.971 kb on + strand, within LRK53_RS00160at 41.971 kb on + strand, within LRK53_RS00160at 41.971 kb on + strand, within LRK53_RS00160at 41.972 kb on - strand, within LRK53_RS00160at 41.972 kb on - strand, within LRK53_RS00160at 41.972 kb on - strand, within LRK53_RS00160at 41.972 kb on - strand, within LRK53_RS00160at 41.972 kb on - strand, within LRK53_RS00160at 41.995 kb on + strand, within LRK53_RS00160at 41.995 kb on + strand, within LRK53_RS00160at 41.995 kb on + strand, within LRK53_RS00160at 41.995 kb on + strand, within LRK53_RS00160at 41.996 kb on - strand, within LRK53_RS00160at 41.996 kb on - strand, within LRK53_RS00160at 41.996 kb on - strand, within LRK53_RS00160at 41.996 kb on - strand, within LRK53_RS00160at 41.996 kb on - strand, within LRK53_RS00160at 41.996 kb on - strand, within LRK53_RS00160at 42.070 kb on + strand, within LRK53_RS00160at 42.070 kb on + strand, within LRK53_RS00160at 42.070 kb on + strand, within LRK53_RS00160at 42.071 kb on - strand, within LRK53_RS00160at 42.071 kb on - strand, within LRK53_RS00160

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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39,949 + LRK53_RS00140 0.82 -2.0
39,949 + LRK53_RS00140 0.82 +0.4
39,949 + LRK53_RS00140 0.82 -0.7
39,949 + LRK53_RS00140 0.82 -1.0
39,950 - LRK53_RS00140 0.82 +0.4
39,950 - LRK53_RS00140 0.82 +1.0
40,264 + +0.9
40,264 + -0.4
40,264 + -0.6
40,265 - +0.0
40,265 - -1.3
40,265 - -0.1
40,304 + +0.0
40,305 - +2.0
40,305 - -0.7
40,563 - LRK53_RS00145 0.45 -0.7
40,563 - LRK53_RS00145 0.45 -0.5
40,563 - LRK53_RS00145 0.45 +0.4
40,563 - LRK53_RS00145 0.45 -0.5
40,563 - LRK53_RS00145 0.45 -1.0
40,706 + LRK53_RS00145 0.68 +1.2
40,808 + LRK53_RS00145 0.85 -1.9
40,808 + LRK53_RS00145 0.85 +0.3
40,808 + LRK53_RS00145 0.85 +1.0
40,808 + LRK53_RS00145 0.85 -0.2
40,808 + LRK53_RS00145 0.85 -0.8
40,808 + LRK53_RS00145 0.85 +0.8
40,809 - LRK53_RS00145 0.85 +0.5
40,809 - LRK53_RS00145 0.85 -1.5
40,809 - LRK53_RS00145 0.85 +0.4
40,809 - LRK53_RS00145 0.85 +0.1
40,809 - LRK53_RS00145 0.85 -1.3
40,809 - LRK53_RS00145 0.85 +0.2
40,809 - LRK53_RS00145 0.85 -0.2
40,809 - LRK53_RS00145 0.85 -0.0
40,809 - LRK53_RS00145 0.85 -1.4
40,809 - LRK53_RS00145 0.85 +1.8
40,944 + LRK53_RS00150 0.17 -1.3
40,957 - LRK53_RS00150 0.24 -1.1
40,957 - LRK53_RS00150 0.24 +0.9
40,986 + LRK53_RS00150 0.40 -0.3
40,986 + LRK53_RS00150 0.40 -1.3
40,986 + LRK53_RS00150 0.40 -0.6
40,986 + LRK53_RS00150 0.40 -1.0
40,986 + LRK53_RS00150 0.40 +0.2
40,986 + LRK53_RS00150 0.40 -0.5
40,986 + LRK53_RS00150 0.40 -2.8
40,986 + LRK53_RS00150 0.40 +1.2
40,986 + LRK53_RS00150 0.40 -1.1
40,986 + LRK53_RS00150 0.40 -1.1
40,987 - LRK53_RS00150 0.40 -0.7
40,987 - LRK53_RS00150 0.40 +0.2
40,987 - LRK53_RS00150 0.40 +0.1
40,987 - LRK53_RS00150 0.40 -0.0
41,108 + -1.0
41,108 + +0.5
41,108 + -1.2
41,108 + +2.1
41,108 + -0.4
41,108 + -1.4
41,108 + +2.3
41,108 + -0.2
41,108 + +0.5
41,108 + -0.9
41,108 + -0.4
41,108 + -0.7
41,108 + -0.9
41,108 + -2.6
41,108 + -0.5
41,109 - -1.6
41,109 - -0.8
41,109 - -0.0
41,109 - +0.3
41,109 - +0.6
41,109 - +2.8
41,109 - -0.5
41,109 - +0.2
41,109 - -0.0
41,109 - -0.9
41,136 + -1.2
41,136 + +0.2
41,136 + -0.2
41,136 + -2.4
41,198 - LRK53_RS00155 0.25 -0.4
41,276 + LRK53_RS00155 0.44 +1.0
41,276 + LRK53_RS00155 0.44 -0.1
41,276 + LRK53_RS00155 0.44 -0.7
41,276 + LRK53_RS00155 0.44 -1.5
41,277 - LRK53_RS00155 0.45 -0.9
41,372 + LRK53_RS00155 0.68 -1.6
41,372 + LRK53_RS00155 0.68 -1.3
41,372 + LRK53_RS00155 0.68 -0.0
41,372 + LRK53_RS00155 0.68 -1.6
41,372 + LRK53_RS00155 0.68 -1.7
41,372 + LRK53_RS00155 0.68 -0.0
41,372 + LRK53_RS00155 0.68 -0.1
41,373 - LRK53_RS00155 0.68 -0.4
41,373 - LRK53_RS00155 0.68 -0.6
41,373 - LRK53_RS00155 0.68 +2.8
41,373 - LRK53_RS00155 0.68 -0.4
41,546 + -1.0
41,546 + +3.2
41,547 - +2.2
41,547 - +0.5
41,547 - -0.5
41,593 + -0.3
41,593 + -0.2
41,593 + -0.6
41,713 + LRK53_RS00160 0.16 +1.0
41,776 + LRK53_RS00160 0.25 +1.1
41,777 - LRK53_RS00160 0.25 -1.5
41,777 - LRK53_RS00160 0.25 -0.5
41,777 - LRK53_RS00160 0.25 -0.5
41,777 - LRK53_RS00160 0.25 -0.8
41,777 - LRK53_RS00160 0.25 +0.4
41,971 + LRK53_RS00160 0.52 -0.0
41,971 + LRK53_RS00160 0.52 -0.1
41,971 + LRK53_RS00160 0.52 -1.9
41,971 + LRK53_RS00160 0.52 -1.5
41,971 + LRK53_RS00160 0.52 -0.5
41,972 - LRK53_RS00160 0.52 +0.2
41,972 - LRK53_RS00160 0.52 +0.2
41,972 - LRK53_RS00160 0.52 -0.3
41,972 - LRK53_RS00160 0.52 +1.6
41,972 - LRK53_RS00160 0.52 -1.1
41,995 + LRK53_RS00160 0.56 -0.8
41,995 + LRK53_RS00160 0.56 +0.1
41,995 + LRK53_RS00160 0.56 -1.4
41,995 + LRK53_RS00160 0.56 +1.0
41,996 - LRK53_RS00160 0.56 +1.0
41,996 - LRK53_RS00160 0.56 +0.9
41,996 - LRK53_RS00160 0.56 +1.8
41,996 - LRK53_RS00160 0.56 -2.0
41,996 - LRK53_RS00160 0.56 -0.5
41,996 - LRK53_RS00160 0.56 -0.0
42,070 + LRK53_RS00160 0.66 +0.3
42,070 + LRK53_RS00160 0.66 +0.5
42,070 + LRK53_RS00160 0.66 -1.6
42,071 - LRK53_RS00160 0.67 +1.0
42,071 - LRK53_RS00160 0.67 -1.2

Or see this region's nucleotide sequence