Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS16075

Experiment: Guanine 0.6617 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS16070 and A4249_RS16075 are separated by 290 nucleotidesA4249_RS16075 and A4249_RS16080 are separated by 74 nucleotidesA4249_RS16080 and A4249_RS16085 are separated by 78 nucleotides A4249_RS16070: A4249_RS16070 - LPS export ABC transporter ATP-binding protein, at 3,236,290 to 3,237,081 _RS16070 A4249_RS16075: A4249_RS16075 - RNA polymerase factor sigma-54, at 3,237,372 to 3,238,871 _RS16075 A4249_RS16080: A4249_RS16080 - ribosome-associated translation inhibitor RaiA, at 3,238,946 to 3,239,590 _RS16080 A4249_RS16085: A4249_RS16085 - PTS IIA-like nitrogen regulatory protein PtsN, at 3,239,669 to 3,240,136 _RS16085 Position (kb) 3237 3238 3239Strain fitness (log2 ratio) -2 -1 0 1at 3237.092 kb on + strandat 3237.092 kb on + strandat 3237.092 kb on + strandat 3237.092 kb on + strandat 3237.092 kb on + strandat 3237.092 kb on + strandat 3237.092 kb on + strandat 3237.092 kb on + strandat 3237.092 kb on + strandat 3237.093 kb on - strandat 3237.093 kb on - strandat 3237.093 kb on - strandat 3237.093 kb on - strandat 3237.093 kb on - strandat 3237.093 kb on - strandat 3237.093 kb on - strandat 3237.188 kb on + strandat 3237.189 kb on - strandat 3237.388 kb on + strandat 3237.389 kb on - strandat 3237.651 kb on + strand, within A4249_RS16075at 3237.651 kb on + strand, within A4249_RS16075at 3237.651 kb on + strand, within A4249_RS16075at 3237.651 kb on + strand, within A4249_RS16075at 3237.651 kb on + strand, within A4249_RS16075at 3237.651 kb on + strand, within A4249_RS16075at 3237.652 kb on - strand, within A4249_RS16075at 3237.652 kb on - strand, within A4249_RS16075at 3237.652 kb on - strand, within A4249_RS16075at 3237.894 kb on + strand, within A4249_RS16075at 3237.894 kb on + strand, within A4249_RS16075at 3237.894 kb on + strand, within A4249_RS16075at 3238.326 kb on + strand, within A4249_RS16075at 3238.327 kb on - strand, within A4249_RS16075at 3238.327 kb on - strand, within A4249_RS16075at 3238.439 kb on + strand, within A4249_RS16075at 3238.440 kb on - strand, within A4249_RS16075at 3238.587 kb on + strand, within A4249_RS16075at 3238.587 kb on + strand, within A4249_RS16075at 3238.587 kb on + strand, within A4249_RS16075at 3238.587 kb on + strand, within A4249_RS16075at 3238.587 kb on + strand, within A4249_RS16075at 3238.587 kb on + strand, within A4249_RS16075at 3238.587 kb on + strand, within A4249_RS16075at 3238.587 kb on + strand, within A4249_RS16075at 3238.587 kb on + strand, within A4249_RS16075at 3238.587 kb on + strand, within A4249_RS16075at 3238.587 kb on + strand, within A4249_RS16075at 3238.587 kb on + strand, within A4249_RS16075at 3238.587 kb on + strand, within A4249_RS16075at 3238.587 kb on + strand, within A4249_RS16075at 3238.588 kb on - strand, within A4249_RS16075at 3238.588 kb on - strand, within A4249_RS16075at 3238.588 kb on - strand, within A4249_RS16075at 3238.588 kb on - strand, within A4249_RS16075at 3238.588 kb on - strand, within A4249_RS16075at 3238.588 kb on - strand, within A4249_RS16075at 3238.588 kb on - strand, within A4249_RS16075at 3238.588 kb on - strand, within A4249_RS16075at 3238.588 kb on - strand, within A4249_RS16075at 3238.588 kb on - strand, within A4249_RS16075at 3238.589 kb on + strand, within A4249_RS16075at 3238.589 kb on + strand, within A4249_RS16075at 3238.589 kb on + strand, within A4249_RS16075at 3238.940 kb on - strandat 3238.940 kb on - strandat 3238.940 kb on - strandat 3239.037 kb on - strand, within A4249_RS16080at 3239.037 kb on - strand, within A4249_RS16080at 3239.425 kb on + strand, within A4249_RS16080at 3239.425 kb on + strand, within A4249_RS16080at 3239.425 kb on + strand, within A4249_RS16080at 3239.425 kb on + strand, within A4249_RS16080at 3239.516 kb on + strand, within A4249_RS16080at 3239.516 kb on + strand, within A4249_RS16080at 3239.517 kb on - strand, within A4249_RS16080at 3239.588 kb on + strandat 3239.588 kb on + strandat 3239.588 kb on + strandat 3239.588 kb on + strandat 3239.588 kb on + strandat 3239.588 kb on + strandat 3239.588 kb on + strandat 3239.588 kb on + strandat 3239.589 kb on - strandat 3239.589 kb on - strandat 3239.589 kb on - strandat 3239.589 kb on - strandat 3239.589 kb on - strandat 3239.589 kb on - strandat 3239.667 kb on + strandat 3239.667 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanine 0.6617 mM (C)
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3,237,092 + -1.3
3,237,092 + -0.1
3,237,092 + -0.1
3,237,092 + -0.3
3,237,092 + -0.1
3,237,092 + +1.1
3,237,092 + +0.1
3,237,092 + -0.0
3,237,092 + -0.8
3,237,093 - -1.3
3,237,093 - -0.3
3,237,093 - -0.5
3,237,093 - -0.0
3,237,093 - -0.2
3,237,093 - -0.9
3,237,093 - -0.0
3,237,188 + +0.1
3,237,189 - -1.0
3,237,388 + +0.0
3,237,389 - +0.7
3,237,651 + A4249_RS16075 0.19 +1.2
3,237,651 + A4249_RS16075 0.19 -0.8
3,237,651 + A4249_RS16075 0.19 +0.1
3,237,651 + A4249_RS16075 0.19 -1.8
3,237,651 + A4249_RS16075 0.19 +0.4
3,237,651 + A4249_RS16075 0.19 +1.5
3,237,652 - A4249_RS16075 0.19 -1.3
3,237,652 - A4249_RS16075 0.19 -0.0
3,237,652 - A4249_RS16075 0.19 +1.3
3,237,894 + A4249_RS16075 0.35 +0.7
3,237,894 + A4249_RS16075 0.35 +0.2
3,237,894 + A4249_RS16075 0.35 +0.2
3,238,326 + A4249_RS16075 0.64 +0.1
3,238,327 - A4249_RS16075 0.64 +0.6
3,238,327 - A4249_RS16075 0.64 -0.0
3,238,439 + A4249_RS16075 0.71 +0.6
3,238,440 - A4249_RS16075 0.71 -0.5
3,238,587 + A4249_RS16075 0.81 -0.8
3,238,587 + A4249_RS16075 0.81 -0.0
3,238,587 + A4249_RS16075 0.81 +0.1
3,238,587 + A4249_RS16075 0.81 -1.0
3,238,587 + A4249_RS16075 0.81 -1.6
3,238,587 + A4249_RS16075 0.81 -0.5
3,238,587 + A4249_RS16075 0.81 +1.2
3,238,587 + A4249_RS16075 0.81 +0.4
3,238,587 + A4249_RS16075 0.81 +1.7
3,238,587 + A4249_RS16075 0.81 +1.2
3,238,587 + A4249_RS16075 0.81 +0.3
3,238,587 + A4249_RS16075 0.81 -1.2
3,238,587 + A4249_RS16075 0.81 -0.8
3,238,587 + A4249_RS16075 0.81 -0.8
3,238,588 - A4249_RS16075 0.81 +0.1
3,238,588 - A4249_RS16075 0.81 +0.6
3,238,588 - A4249_RS16075 0.81 +0.7
3,238,588 - A4249_RS16075 0.81 +0.7
3,238,588 - A4249_RS16075 0.81 -0.2
3,238,588 - A4249_RS16075 0.81 -1.0
3,238,588 - A4249_RS16075 0.81 -0.2
3,238,588 - A4249_RS16075 0.81 +0.5
3,238,588 - A4249_RS16075 0.81 -0.5
3,238,588 - A4249_RS16075 0.81 +1.0
3,238,589 + A4249_RS16075 0.81 -0.0
3,238,589 + A4249_RS16075 0.81 +0.6
3,238,589 + A4249_RS16075 0.81 -0.3
3,238,940 - -0.1
3,238,940 - -0.7
3,238,940 - -1.5
3,239,037 - A4249_RS16080 0.14 -0.0
3,239,037 - A4249_RS16080 0.14 +1.7
3,239,425 + A4249_RS16080 0.74 -0.1
3,239,425 + A4249_RS16080 0.74 -0.2
3,239,425 + A4249_RS16080 0.74 +0.2
3,239,425 + A4249_RS16080 0.74 -0.2
3,239,516 + A4249_RS16080 0.88 -0.1
3,239,516 + A4249_RS16080 0.88 -0.9
3,239,517 - A4249_RS16080 0.89 +0.5
3,239,588 + +0.1
3,239,588 + +0.2
3,239,588 + +0.6
3,239,588 + -0.4
3,239,588 + +0.2
3,239,588 + +0.1
3,239,588 + -0.3
3,239,588 + -0.0
3,239,589 - -0.5
3,239,589 - -0.2
3,239,589 - +1.7
3,239,589 - +0.4
3,239,589 - +0.3
3,239,589 - -0.5
3,239,667 + -0.6
3,239,667 + -0.5

Or see this region's nucleotide sequence