Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS13645

Experiment: Guanine 0.6617 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS13640 and A4249_RS13645 overlap by 4 nucleotidesA4249_RS13645 and A4249_RS13650 are separated by 72 nucleotidesA4249_RS13650 and A4249_RS13655 are separated by 24 nucleotides A4249_RS13640: A4249_RS13640 - molecular chaperone DnaJ, at 2,757,007 to 2,758,209 _RS13640 A4249_RS13645: A4249_RS13645 - 4-hydroxy-tetrahydrodipicolinate reductase, at 2,758,206 to 2,758,955 _RS13645 A4249_RS13650: A4249_RS13650 - DNA polymerase III subunit epsilon, at 2,759,028 to 2,759,750 _RS13650 A4249_RS13655: A4249_RS13655 - dephospho-CoA kinase, at 2,759,775 to 2,760,407 _RS13655 Position (kb) 2758 2759Strain fitness (log2 ratio) -1 0 1 2at 2757.764 kb on + strand, within A4249_RS13640at 2757.766 kb on + strand, within A4249_RS13640at 2757.766 kb on + strand, within A4249_RS13640at 2757.766 kb on + strand, within A4249_RS13640at 2757.766 kb on + strand, within A4249_RS13640at 2757.766 kb on + strand, within A4249_RS13640at 2757.767 kb on - strand, within A4249_RS13640at 2757.767 kb on - strand, within A4249_RS13640at 2757.767 kb on - strand, within A4249_RS13640at 2757.767 kb on - strand, within A4249_RS13640at 2758.954 kb on - strandat 2758.954 kb on - strandat 2758.954 kb on - strandat 2759.018 kb on + strandat 2759.018 kb on + strandat 2759.018 kb on + strandat 2759.018 kb on + strandat 2759.018 kb on + strandat 2759.018 kb on + strandat 2759.018 kb on + strandat 2759.018 kb on + strandat 2759.018 kb on + strandat 2759.018 kb on + strandat 2759.018 kb on + strandat 2759.018 kb on + strandat 2759.019 kb on - strandat 2759.019 kb on - strandat 2759.019 kb on - strandat 2759.019 kb on - strandat 2759.030 kb on - strandat 2759.059 kb on + strandat 2759.085 kb on - strandat 2759.085 kb on - strandat 2759.341 kb on - strand, within A4249_RS13650at 2759.759 kb on - strandat 2759.759 kb on - strandat 2759.811 kb on + strandat 2759.812 kb on - strandat 2759.812 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Guanine 0.6617 mM (C)
remove
2,757,764 + A4249_RS13640 0.63 +0.5
2,757,766 + A4249_RS13640 0.63 +0.1
2,757,766 + A4249_RS13640 0.63 +1.6
2,757,766 + A4249_RS13640 0.63 +0.8
2,757,766 + A4249_RS13640 0.63 -0.8
2,757,766 + A4249_RS13640 0.63 +1.4
2,757,767 - A4249_RS13640 0.63 +0.5
2,757,767 - A4249_RS13640 0.63 -0.1
2,757,767 - A4249_RS13640 0.63 +1.8
2,757,767 - A4249_RS13640 0.63 +1.7
2,758,954 - +0.7
2,758,954 - +0.5
2,758,954 - -0.1
2,759,018 + +0.3
2,759,018 + +0.6
2,759,018 + -0.1
2,759,018 + -0.2
2,759,018 + +0.7
2,759,018 + -0.6
2,759,018 + -0.1
2,759,018 + +0.1
2,759,018 + +0.4
2,759,018 + +0.4
2,759,018 + -0.3
2,759,018 + -0.8
2,759,019 - +0.4
2,759,019 - +0.1
2,759,019 - +0.9
2,759,019 - +1.0
2,759,030 - -1.0
2,759,059 + -0.3
2,759,085 - +0.5
2,759,085 - -0.4
2,759,341 - A4249_RS13650 0.43 -0.9
2,759,759 - -0.3
2,759,759 - -1.4
2,759,811 + -0.2
2,759,812 - -0.0
2,759,812 - -0.4

Or see this region's nucleotide sequence