Experiment: Guanine 0.6617 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS12210 and A4249_RS12215 overlap by 4 nucleotides A4249_RS12215 and A4249_RS12220 are separated by 202 nucleotides A4249_RS12220 and A4249_RS12225 are separated by 0 nucleotides A4249_RS12225 and A4249_RS12230 are separated by 135 nucleotides
A4249_RS12210: A4249_RS12210 - tyrosine recombinase XerC, at 2,452,912 to 2,453,841
_RS12210
A4249_RS12215: A4249_RS12215 - hypothetical protein, at 2,453,838 to 2,454,182
_RS12215
A4249_RS12220: A4249_RS12220 - retroviral-like aspartic protease family protein, at 2,454,385 to 2,455,332
_RS12220
A4249_RS12225: A4249_RS12225 - SDR family oxidoreductase, at 2,455,333 to 2,456,124
_RS12225
A4249_RS12230: A4249_RS12230 - hypothetical protein, at 2,456,260 to 2,456,637
_RS12230
Position (kb)
2454
2455
2456 Strain fitness (log2 ratio)
-1
0
1 at 2453.387 kb on - strand, within A4249_RS12210 at 2453.530 kb on + strand, within A4249_RS12210 at 2453.779 kb on + strand at 2453.780 kb on - strand at 2453.840 kb on - strand at 2453.932 kb on + strand, within A4249_RS12215 at 2453.932 kb on + strand, within A4249_RS12215 at 2453.932 kb on + strand, within A4249_RS12215 at 2453.932 kb on + strand, within A4249_RS12215 at 2453.932 kb on + strand, within A4249_RS12215 at 2453.933 kb on - strand, within A4249_RS12215 at 2453.933 kb on - strand, within A4249_RS12215 at 2453.933 kb on - strand, within A4249_RS12215 at 2453.984 kb on - strand, within A4249_RS12215 at 2454.146 kb on + strand, within A4249_RS12215 at 2454.167 kb on + strand at 2454.167 kb on + strand at 2454.167 kb on + strand at 2454.167 kb on + strand at 2454.167 kb on + strand at 2454.167 kb on + strand at 2454.167 kb on + strand at 2454.167 kb on + strand at 2454.168 kb on - strand at 2454.168 kb on - strand at 2454.168 kb on - strand at 2454.168 kb on - strand at 2454.168 kb on - strand at 2454.168 kb on - strand at 2454.168 kb on - strand at 2454.168 kb on - strand at 2454.168 kb on - strand at 2454.168 kb on - strand at 2454.168 kb on - strand at 2454.202 kb on + strand at 2454.210 kb on + strand at 2454.211 kb on - strand at 2454.233 kb on + strand at 2454.271 kb on + strand at 2454.272 kb on - strand at 2454.272 kb on - strand at 2454.293 kb on + strand at 2454.293 kb on + strand at 2454.293 kb on + strand at 2454.293 kb on + strand at 2454.293 kb on + strand at 2454.293 kb on + strand at 2454.293 kb on + strand at 2454.293 kb on + strand at 2454.293 kb on + strand at 2454.293 kb on + strand at 2454.293 kb on + strand at 2454.293 kb on + strand at 2454.293 kb on + strand at 2454.293 kb on + strand at 2454.293 kb on + strand at 2454.293 kb on + strand at 2454.293 kb on + strand at 2454.293 kb on + strand at 2454.293 kb on + strand at 2454.293 kb on + strand at 2454.293 kb on + strand at 2454.294 kb on - strand at 2454.294 kb on - strand at 2454.294 kb on - strand at 2454.294 kb on - strand at 2454.294 kb on - strand at 2454.294 kb on - strand at 2454.294 kb on - strand at 2454.294 kb on - strand at 2454.294 kb on - strand at 2454.294 kb on - strand at 2454.294 kb on - strand at 2454.294 kb on - strand at 2454.294 kb on - strand at 2454.294 kb on - strand at 2454.294 kb on - strand at 2454.294 kb on - strand at 2454.294 kb on - strand at 2454.294 kb on - strand at 2454.294 kb on - strand at 2454.294 kb on - strand at 2454.294 kb on - strand at 2454.322 kb on + strand at 2454.844 kb on - strand, within A4249_RS12220 at 2454.938 kb on + strand, within A4249_RS12220 at 2454.938 kb on + strand, within A4249_RS12220 at 2454.938 kb on + strand, within A4249_RS12220 at 2454.938 kb on + strand, within A4249_RS12220 at 2454.938 kb on + strand, within A4249_RS12220 at 2454.938 kb on + strand, within A4249_RS12220 at 2454.939 kb on - strand, within A4249_RS12220 at 2454.939 kb on - strand, within A4249_RS12220 at 2454.939 kb on - strand, within A4249_RS12220 at 2454.939 kb on - strand, within A4249_RS12220 at 2454.939 kb on - strand, within A4249_RS12220 at 2454.939 kb on - strand, within A4249_RS12220 at 2454.939 kb on - strand, within A4249_RS12220 at 2455.004 kb on - strand, within A4249_RS12220 at 2455.137 kb on + strand, within A4249_RS12220 at 2455.137 kb on + strand, within A4249_RS12220 at 2455.137 kb on + strand, within A4249_RS12220 at 2455.243 kb on - strand at 2455.276 kb on + strand at 2455.385 kb on + strand at 2455.385 kb on + strand at 2455.385 kb on + strand at 2455.385 kb on + strand at 2455.385 kb on + strand at 2455.386 kb on - strand at 2455.386 kb on - strand at 2455.549 kb on - strand, within A4249_RS12225 at 2455.942 kb on + strand, within A4249_RS12225 at 2455.942 kb on + strand, within A4249_RS12225
Per-strain Table
Position Strand Gene LocusTag Fraction Guanine 0.6617 mM (C) remove 2,453,387 - A4249_RS12210 0.51 +0.3 2,453,530 + A4249_RS12210 0.66 +0.5 2,453,779 + +0.6 2,453,780 - +0.1 2,453,840 - +0.3 2,453,932 + A4249_RS12215 0.27 +0.5 2,453,932 + A4249_RS12215 0.27 -0.4 2,453,932 + A4249_RS12215 0.27 -0.2 2,453,932 + A4249_RS12215 0.27 +0.5 2,453,932 + A4249_RS12215 0.27 +1.2 2,453,933 - A4249_RS12215 0.28 +0.5 2,453,933 - A4249_RS12215 0.28 -0.4 2,453,933 - A4249_RS12215 0.28 +0.1 2,453,984 - A4249_RS12215 0.42 -1.1 2,454,146 + A4249_RS12215 0.89 -1.2 2,454,167 + -0.3 2,454,167 + -0.2 2,454,167 + +0.4 2,454,167 + -1.0 2,454,167 + +0.2 2,454,167 + +0.7 2,454,167 + -0.4 2,454,167 + -0.3 2,454,168 - -0.2 2,454,168 - -0.3 2,454,168 - +1.2 2,454,168 - +0.9 2,454,168 - -1.7 2,454,168 - -0.3 2,454,168 - -0.5 2,454,168 - +0.1 2,454,168 - -0.2 2,454,168 - -0.3 2,454,168 - -0.0 2,454,202 + +0.1 2,454,210 + -0.2 2,454,211 - -0.1 2,454,233 + -0.3 2,454,271 + -0.9 2,454,272 - +0.2 2,454,272 - -0.8 2,454,293 + +0.4 2,454,293 + -0.8 2,454,293 + -0.4 2,454,293 + -0.8 2,454,293 + -1.2 2,454,293 + +0.1 2,454,293 + +1.2 2,454,293 + -0.7 2,454,293 + -0.6 2,454,293 + -0.2 2,454,293 + -0.9 2,454,293 + +0.5 2,454,293 + -0.5 2,454,293 + -0.1 2,454,293 + +1.7 2,454,293 + -0.3 2,454,293 + -0.3 2,454,293 + +0.4 2,454,293 + -0.8 2,454,293 + +1.1 2,454,293 + +0.8 2,454,294 - -1.1 2,454,294 - +0.7 2,454,294 - -0.2 2,454,294 - -0.3 2,454,294 - -0.5 2,454,294 - -0.3 2,454,294 - +0.4 2,454,294 - -0.4 2,454,294 - -0.1 2,454,294 - -0.5 2,454,294 - +0.6 2,454,294 - -0.2 2,454,294 - -0.0 2,454,294 - -0.6 2,454,294 - -0.4 2,454,294 - +0.1 2,454,294 - +0.6 2,454,294 - +0.2 2,454,294 - +1.0 2,454,294 - -0.9 2,454,294 - +0.1 2,454,322 + +0.2 2,454,844 - A4249_RS12220 0.48 -0.6 2,454,938 + A4249_RS12220 0.58 +0.3 2,454,938 + A4249_RS12220 0.58 -0.1 2,454,938 + A4249_RS12220 0.58 -1.1 2,454,938 + A4249_RS12220 0.58 +1.0 2,454,938 + A4249_RS12220 0.58 -0.1 2,454,938 + A4249_RS12220 0.58 +0.2 2,454,939 - A4249_RS12220 0.58 -1.3 2,454,939 - A4249_RS12220 0.58 +1.0 2,454,939 - A4249_RS12220 0.58 +0.0 2,454,939 - A4249_RS12220 0.58 +0.2 2,454,939 - A4249_RS12220 0.58 -0.2 2,454,939 - A4249_RS12220 0.58 +0.3 2,454,939 - A4249_RS12220 0.58 -0.5 2,455,004 - A4249_RS12220 0.65 +1.0 2,455,137 + A4249_RS12220 0.79 +0.1 2,455,137 + A4249_RS12220 0.79 -0.7 2,455,137 + A4249_RS12220 0.79 +0.4 2,455,243 - -0.0 2,455,276 + +0.4 2,455,385 + -0.0 2,455,385 + -1.5 2,455,385 + -0.2 2,455,385 + -0.3 2,455,385 + -0.1 2,455,386 - -1.1 2,455,386 - +0.8 2,455,549 - A4249_RS12225 0.27 +0.0 2,455,942 + A4249_RS12225 0.77 +0.4 2,455,942 + A4249_RS12225 0.77 +0.9
Or see this region's nucleotide sequence