Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS12220

Experiment: Guanine 0.6617 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS12210 and A4249_RS12215 overlap by 4 nucleotidesA4249_RS12215 and A4249_RS12220 are separated by 202 nucleotidesA4249_RS12220 and A4249_RS12225 are separated by 0 nucleotidesA4249_RS12225 and A4249_RS12230 are separated by 135 nucleotides A4249_RS12210: A4249_RS12210 - tyrosine recombinase XerC, at 2,452,912 to 2,453,841 _RS12210 A4249_RS12215: A4249_RS12215 - hypothetical protein, at 2,453,838 to 2,454,182 _RS12215 A4249_RS12220: A4249_RS12220 - retroviral-like aspartic protease family protein, at 2,454,385 to 2,455,332 _RS12220 A4249_RS12225: A4249_RS12225 - SDR family oxidoreductase, at 2,455,333 to 2,456,124 _RS12225 A4249_RS12230: A4249_RS12230 - hypothetical protein, at 2,456,260 to 2,456,637 _RS12230 Position (kb) 2454 2455 2456Strain fitness (log2 ratio) -1 0 1at 2453.387 kb on - strand, within A4249_RS12210at 2453.530 kb on + strand, within A4249_RS12210at 2453.779 kb on + strandat 2453.780 kb on - strandat 2453.840 kb on - strandat 2453.932 kb on + strand, within A4249_RS12215at 2453.932 kb on + strand, within A4249_RS12215at 2453.932 kb on + strand, within A4249_RS12215at 2453.932 kb on + strand, within A4249_RS12215at 2453.932 kb on + strand, within A4249_RS12215at 2453.933 kb on - strand, within A4249_RS12215at 2453.933 kb on - strand, within A4249_RS12215at 2453.933 kb on - strand, within A4249_RS12215at 2453.984 kb on - strand, within A4249_RS12215at 2454.146 kb on + strand, within A4249_RS12215at 2454.167 kb on + strandat 2454.167 kb on + strandat 2454.167 kb on + strandat 2454.167 kb on + strandat 2454.167 kb on + strandat 2454.167 kb on + strandat 2454.167 kb on + strandat 2454.167 kb on + strandat 2454.168 kb on - strandat 2454.168 kb on - strandat 2454.168 kb on - strandat 2454.168 kb on - strandat 2454.168 kb on - strandat 2454.168 kb on - strandat 2454.168 kb on - strandat 2454.168 kb on - strandat 2454.168 kb on - strandat 2454.168 kb on - strandat 2454.168 kb on - strandat 2454.202 kb on + strandat 2454.210 kb on + strandat 2454.211 kb on - strandat 2454.233 kb on + strandat 2454.271 kb on + strandat 2454.272 kb on - strandat 2454.272 kb on - strandat 2454.293 kb on + strandat 2454.293 kb on + strandat 2454.293 kb on + strandat 2454.293 kb on + strandat 2454.293 kb on + strandat 2454.293 kb on + strandat 2454.293 kb on + strandat 2454.293 kb on + strandat 2454.293 kb on + strandat 2454.293 kb on + strandat 2454.293 kb on + strandat 2454.293 kb on + strandat 2454.293 kb on + strandat 2454.293 kb on + strandat 2454.293 kb on + strandat 2454.293 kb on + strandat 2454.293 kb on + strandat 2454.293 kb on + strandat 2454.293 kb on + strandat 2454.293 kb on + strandat 2454.293 kb on + strandat 2454.294 kb on - strandat 2454.294 kb on - strandat 2454.294 kb on - strandat 2454.294 kb on - strandat 2454.294 kb on - strandat 2454.294 kb on - strandat 2454.294 kb on - strandat 2454.294 kb on - strandat 2454.294 kb on - strandat 2454.294 kb on - strandat 2454.294 kb on - strandat 2454.294 kb on - strandat 2454.294 kb on - strandat 2454.294 kb on - strandat 2454.294 kb on - strandat 2454.294 kb on - strandat 2454.294 kb on - strandat 2454.294 kb on - strandat 2454.294 kb on - strandat 2454.294 kb on - strandat 2454.294 kb on - strandat 2454.322 kb on + strandat 2454.844 kb on - strand, within A4249_RS12220at 2454.938 kb on + strand, within A4249_RS12220at 2454.938 kb on + strand, within A4249_RS12220at 2454.938 kb on + strand, within A4249_RS12220at 2454.938 kb on + strand, within A4249_RS12220at 2454.938 kb on + strand, within A4249_RS12220at 2454.938 kb on + strand, within A4249_RS12220at 2454.939 kb on - strand, within A4249_RS12220at 2454.939 kb on - strand, within A4249_RS12220at 2454.939 kb on - strand, within A4249_RS12220at 2454.939 kb on - strand, within A4249_RS12220at 2454.939 kb on - strand, within A4249_RS12220at 2454.939 kb on - strand, within A4249_RS12220at 2454.939 kb on - strand, within A4249_RS12220at 2455.004 kb on - strand, within A4249_RS12220at 2455.137 kb on + strand, within A4249_RS12220at 2455.137 kb on + strand, within A4249_RS12220at 2455.137 kb on + strand, within A4249_RS12220at 2455.243 kb on - strandat 2455.276 kb on + strandat 2455.385 kb on + strandat 2455.385 kb on + strandat 2455.385 kb on + strandat 2455.385 kb on + strandat 2455.385 kb on + strandat 2455.386 kb on - strandat 2455.386 kb on - strandat 2455.549 kb on - strand, within A4249_RS12225at 2455.942 kb on + strand, within A4249_RS12225at 2455.942 kb on + strand, within A4249_RS12225

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanine 0.6617 mM (C)
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2,453,387 - A4249_RS12210 0.51 +0.3
2,453,530 + A4249_RS12210 0.66 +0.5
2,453,779 + +0.6
2,453,780 - +0.1
2,453,840 - +0.3
2,453,932 + A4249_RS12215 0.27 +0.5
2,453,932 + A4249_RS12215 0.27 -0.4
2,453,932 + A4249_RS12215 0.27 -0.2
2,453,932 + A4249_RS12215 0.27 +0.5
2,453,932 + A4249_RS12215 0.27 +1.2
2,453,933 - A4249_RS12215 0.28 +0.5
2,453,933 - A4249_RS12215 0.28 -0.4
2,453,933 - A4249_RS12215 0.28 +0.1
2,453,984 - A4249_RS12215 0.42 -1.1
2,454,146 + A4249_RS12215 0.89 -1.2
2,454,167 + -0.3
2,454,167 + -0.2
2,454,167 + +0.4
2,454,167 + -1.0
2,454,167 + +0.2
2,454,167 + +0.7
2,454,167 + -0.4
2,454,167 + -0.3
2,454,168 - -0.2
2,454,168 - -0.3
2,454,168 - +1.2
2,454,168 - +0.9
2,454,168 - -1.7
2,454,168 - -0.3
2,454,168 - -0.5
2,454,168 - +0.1
2,454,168 - -0.2
2,454,168 - -0.3
2,454,168 - -0.0
2,454,202 + +0.1
2,454,210 + -0.2
2,454,211 - -0.1
2,454,233 + -0.3
2,454,271 + -0.9
2,454,272 - +0.2
2,454,272 - -0.8
2,454,293 + +0.4
2,454,293 + -0.8
2,454,293 + -0.4
2,454,293 + -0.8
2,454,293 + -1.2
2,454,293 + +0.1
2,454,293 + +1.2
2,454,293 + -0.7
2,454,293 + -0.6
2,454,293 + -0.2
2,454,293 + -0.9
2,454,293 + +0.5
2,454,293 + -0.5
2,454,293 + -0.1
2,454,293 + +1.7
2,454,293 + -0.3
2,454,293 + -0.3
2,454,293 + +0.4
2,454,293 + -0.8
2,454,293 + +1.1
2,454,293 + +0.8
2,454,294 - -1.1
2,454,294 - +0.7
2,454,294 - -0.2
2,454,294 - -0.3
2,454,294 - -0.5
2,454,294 - -0.3
2,454,294 - +0.4
2,454,294 - -0.4
2,454,294 - -0.1
2,454,294 - -0.5
2,454,294 - +0.6
2,454,294 - -0.2
2,454,294 - -0.0
2,454,294 - -0.6
2,454,294 - -0.4
2,454,294 - +0.1
2,454,294 - +0.6
2,454,294 - +0.2
2,454,294 - +1.0
2,454,294 - -0.9
2,454,294 - +0.1
2,454,322 + +0.2
2,454,844 - A4249_RS12220 0.48 -0.6
2,454,938 + A4249_RS12220 0.58 +0.3
2,454,938 + A4249_RS12220 0.58 -0.1
2,454,938 + A4249_RS12220 0.58 -1.1
2,454,938 + A4249_RS12220 0.58 +1.0
2,454,938 + A4249_RS12220 0.58 -0.1
2,454,938 + A4249_RS12220 0.58 +0.2
2,454,939 - A4249_RS12220 0.58 -1.3
2,454,939 - A4249_RS12220 0.58 +1.0
2,454,939 - A4249_RS12220 0.58 +0.0
2,454,939 - A4249_RS12220 0.58 +0.2
2,454,939 - A4249_RS12220 0.58 -0.2
2,454,939 - A4249_RS12220 0.58 +0.3
2,454,939 - A4249_RS12220 0.58 -0.5
2,455,004 - A4249_RS12220 0.65 +1.0
2,455,137 + A4249_RS12220 0.79 +0.1
2,455,137 + A4249_RS12220 0.79 -0.7
2,455,137 + A4249_RS12220 0.79 +0.4
2,455,243 - -0.0
2,455,276 + +0.4
2,455,385 + -0.0
2,455,385 + -1.5
2,455,385 + -0.2
2,455,385 + -0.3
2,455,385 + -0.1
2,455,386 - -1.1
2,455,386 - +0.8
2,455,549 - A4249_RS12225 0.27 +0.0
2,455,942 + A4249_RS12225 0.77 +0.4
2,455,942 + A4249_RS12225 0.77 +0.9

Or see this region's nucleotide sequence