Experiment: Guanine 0.6617 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS11595 and A4249_RS11600 overlap by 11 nucleotides A4249_RS11600 and A4249_RS16630 overlap by 1 nucleotides A4249_RS16630 and A4249_RS11605 overlap by 4 nucleotides A4249_RS11605 and A4249_RS11610 are separated by 315 nucleotides
A4249_RS11595: A4249_RS11595 - cytochrome ubiquinol oxidase subunit I, at 2,331,140 to 2,332,567
_RS11595
A4249_RS11600: A4249_RS11600 - cytochrome d ubiquinol oxidase subunit II, at 2,332,557 to 2,333,558
_RS11600
A4249_RS16630: A4249_RS16630 - DUF2474 family protein, at 2,333,558 to 2,333,686
_RS16630
A4249_RS11605: A4249_RS11605 - isoprenylcysteine carboxylmethyltransferase family protein, at 2,333,683 to 2,334,168
_RS11605
A4249_RS11610: A4249_RS11610 - alginate export family protein, at 2,334,484 to 2,335,026
_RS11610
Position (kb)
2332
2333
2334 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2331.611 kb on + strand, within A4249_RS11595 at 2331.611 kb on + strand, within A4249_RS11595 at 2331.713 kb on + strand, within A4249_RS11595 at 2331.713 kb on + strand, within A4249_RS11595 at 2331.713 kb on + strand, within A4249_RS11595 at 2331.714 kb on - strand, within A4249_RS11595 at 2331.714 kb on - strand, within A4249_RS11595 at 2331.714 kb on - strand, within A4249_RS11595 at 2331.714 kb on - strand, within A4249_RS11595 at 2331.714 kb on - strand, within A4249_RS11595 at 2331.791 kb on - strand, within A4249_RS11595 at 2331.791 kb on - strand, within A4249_RS11595 at 2332.169 kb on + strand, within A4249_RS11595 at 2332.169 kb on + strand, within A4249_RS11595 at 2332.169 kb on + strand, within A4249_RS11595 at 2332.170 kb on - strand, within A4249_RS11595 at 2332.193 kb on + strand, within A4249_RS11595 at 2332.193 kb on + strand, within A4249_RS11595 at 2332.304 kb on + strand, within A4249_RS11595 at 2332.304 kb on + strand, within A4249_RS11595 at 2332.305 kb on - strand, within A4249_RS11595 at 2332.305 kb on - strand, within A4249_RS11595 at 2332.305 kb on - strand, within A4249_RS11595 at 2332.388 kb on + strand, within A4249_RS11595 at 2332.388 kb on + strand, within A4249_RS11595 at 2332.388 kb on + strand, within A4249_RS11595 at 2332.388 kb on + strand, within A4249_RS11595 at 2332.388 kb on + strand, within A4249_RS11595 at 2332.389 kb on - strand, within A4249_RS11595 at 2332.389 kb on - strand, within A4249_RS11595 at 2332.418 kb on + strand, within A4249_RS11595 at 2332.418 kb on + strand, within A4249_RS11595 at 2332.418 kb on + strand, within A4249_RS11595 at 2332.418 kb on + strand, within A4249_RS11595 at 2332.418 kb on + strand, within A4249_RS11595 at 2332.418 kb on + strand, within A4249_RS11595 at 2332.418 kb on + strand, within A4249_RS11595 at 2332.418 kb on + strand, within A4249_RS11595 at 2332.419 kb on - strand, within A4249_RS11595 at 2332.419 kb on - strand, within A4249_RS11595 at 2332.419 kb on - strand, within A4249_RS11595 at 2332.419 kb on - strand, within A4249_RS11595 at 2332.419 kb on - strand, within A4249_RS11595 at 2332.614 kb on + strand at 2332.614 kb on + strand at 2332.614 kb on + strand at 2332.614 kb on + strand at 2332.614 kb on + strand at 2332.614 kb on + strand at 2332.615 kb on - strand at 2332.615 kb on - strand at 2332.615 kb on - strand at 2332.615 kb on - strand at 2332.615 kb on - strand at 2332.615 kb on - strand at 2332.615 kb on - strand at 2332.615 kb on - strand at 2332.615 kb on - strand at 2332.615 kb on - strand at 2332.616 kb on + strand at 2332.617 kb on - strand at 2332.617 kb on - strand at 2332.617 kb on - strand at 2332.617 kb on - strand at 2332.617 kb on - strand at 2332.782 kb on + strand, within A4249_RS11600 at 2332.782 kb on + strand, within A4249_RS11600 at 2332.783 kb on - strand, within A4249_RS11600 at 2332.783 kb on - strand, within A4249_RS11600 at 2332.806 kb on + strand, within A4249_RS11600 at 2332.806 kb on + strand, within A4249_RS11600 at 2332.807 kb on - strand, within A4249_RS11600 at 2332.807 kb on - strand, within A4249_RS11600 at 2332.807 kb on - strand, within A4249_RS11600 at 2332.807 kb on - strand, within A4249_RS11600 at 2333.071 kb on + strand, within A4249_RS11600 at 2333.072 kb on - strand, within A4249_RS11600 at 2333.211 kb on + strand, within A4249_RS11600 at 2333.212 kb on - strand, within A4249_RS11600 at 2333.394 kb on + strand, within A4249_RS11600 at 2333.494 kb on + strand at 2333.495 kb on - strand at 2333.495 kb on - strand at 2333.495 kb on - strand at 2333.499 kb on + strand at 2333.499 kb on + strand at 2333.500 kb on - strand at 2333.500 kb on - strand at 2333.500 kb on - strand at 2333.500 kb on - strand at 2333.508 kb on + strand at 2333.509 kb on - strand at 2333.509 kb on - strand at 2333.514 kb on + strand at 2333.515 kb on - strand at 2333.648 kb on + strand, within A4249_RS16630 at 2333.649 kb on - strand, within A4249_RS16630 at 2333.953 kb on + strand, within A4249_RS11605 at 2333.954 kb on - strand, within A4249_RS11605 at 2333.954 kb on - strand, within A4249_RS11605 at 2333.954 kb on - strand, within A4249_RS11605 at 2334.112 kb on + strand, within A4249_RS11605 at 2334.112 kb on + strand, within A4249_RS11605 at 2334.166 kb on + strand at 2334.166 kb on + strand at 2334.167 kb on - strand at 2334.167 kb on - strand at 2334.177 kb on + strand at 2334.178 kb on - strand at 2334.178 kb on - strand at 2334.178 kb on - strand at 2334.178 kb on - strand at 2334.335 kb on + strand at 2334.336 kb on - strand at 2334.336 kb on - strand at 2334.336 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Guanine 0.6617 mM (C) remove 2,331,611 + A4249_RS11595 0.33 +0.6 2,331,611 + A4249_RS11595 0.33 -0.9 2,331,713 + A4249_RS11595 0.40 +0.5 2,331,713 + A4249_RS11595 0.40 -0.4 2,331,713 + A4249_RS11595 0.40 +0.1 2,331,714 - A4249_RS11595 0.40 +0.1 2,331,714 - A4249_RS11595 0.40 +0.8 2,331,714 - A4249_RS11595 0.40 -0.2 2,331,714 - A4249_RS11595 0.40 -1.3 2,331,714 - A4249_RS11595 0.40 -0.8 2,331,791 - A4249_RS11595 0.46 -0.4 2,331,791 - A4249_RS11595 0.46 -0.0 2,332,169 + A4249_RS11595 0.72 -1.1 2,332,169 + A4249_RS11595 0.72 -0.5 2,332,169 + A4249_RS11595 0.72 -1.0 2,332,170 - A4249_RS11595 0.72 -0.5 2,332,193 + A4249_RS11595 0.74 +0.2 2,332,193 + A4249_RS11595 0.74 +0.7 2,332,304 + A4249_RS11595 0.82 +0.0 2,332,304 + A4249_RS11595 0.82 -0.4 2,332,305 - A4249_RS11595 0.82 -2.5 2,332,305 - A4249_RS11595 0.82 +0.3 2,332,305 - A4249_RS11595 0.82 -0.6 2,332,388 + A4249_RS11595 0.87 -0.8 2,332,388 + A4249_RS11595 0.87 +0.2 2,332,388 + A4249_RS11595 0.87 -0.2 2,332,388 + A4249_RS11595 0.87 -0.2 2,332,388 + A4249_RS11595 0.87 -0.0 2,332,389 - A4249_RS11595 0.87 -0.6 2,332,389 - A4249_RS11595 0.87 +0.0 2,332,418 + A4249_RS11595 0.89 -0.1 2,332,418 + A4249_RS11595 0.89 +0.2 2,332,418 + A4249_RS11595 0.89 -0.2 2,332,418 + A4249_RS11595 0.89 -0.2 2,332,418 + A4249_RS11595 0.89 -0.5 2,332,418 + A4249_RS11595 0.89 +0.5 2,332,418 + A4249_RS11595 0.89 -2.1 2,332,418 + A4249_RS11595 0.89 -0.1 2,332,419 - A4249_RS11595 0.90 -0.2 2,332,419 - A4249_RS11595 0.90 +0.6 2,332,419 - A4249_RS11595 0.90 -0.2 2,332,419 - A4249_RS11595 0.90 +0.1 2,332,419 - A4249_RS11595 0.90 -0.4 2,332,614 + +0.6 2,332,614 + -0.7 2,332,614 + +0.0 2,332,614 + -0.2 2,332,614 + +0.3 2,332,614 + -0.2 2,332,615 - -0.3 2,332,615 - +0.0 2,332,615 - -0.2 2,332,615 - +0.7 2,332,615 - -0.6 2,332,615 - -0.4 2,332,615 - +0.0 2,332,615 - -0.5 2,332,615 - +0.1 2,332,615 - -0.9 2,332,616 + -0.4 2,332,617 - +0.1 2,332,617 - -0.6 2,332,617 - -0.2 2,332,617 - -1.3 2,332,617 - -0.6 2,332,782 + A4249_RS11600 0.22 +0.1 2,332,782 + A4249_RS11600 0.22 +0.2 2,332,783 - A4249_RS11600 0.23 -0.2 2,332,783 - A4249_RS11600 0.23 +0.8 2,332,806 + A4249_RS11600 0.25 +0.5 2,332,806 + A4249_RS11600 0.25 -1.8 2,332,807 - A4249_RS11600 0.25 -0.8 2,332,807 - A4249_RS11600 0.25 +1.7 2,332,807 - A4249_RS11600 0.25 +0.1 2,332,807 - A4249_RS11600 0.25 -0.4 2,333,071 + A4249_RS11600 0.51 +0.7 2,333,072 - A4249_RS11600 0.51 -0.7 2,333,211 + A4249_RS11600 0.65 +0.2 2,333,212 - A4249_RS11600 0.65 -0.1 2,333,394 + A4249_RS11600 0.84 +0.2 2,333,494 + +0.1 2,333,495 - +0.0 2,333,495 - +0.2 2,333,495 - +0.4 2,333,499 + -0.5 2,333,499 + -0.5 2,333,500 - +0.0 2,333,500 - +0.3 2,333,500 - +0.7 2,333,500 - +0.2 2,333,508 + +0.1 2,333,509 - -0.6 2,333,509 - -0.6 2,333,514 + -0.4 2,333,515 - -1.3 2,333,648 + A4249_RS16630 0.70 +0.1 2,333,649 - A4249_RS16630 0.71 +0.2 2,333,953 + A4249_RS11605 0.56 +0.9 2,333,954 - A4249_RS11605 0.56 +0.3 2,333,954 - A4249_RS11605 0.56 +1.2 2,333,954 - A4249_RS11605 0.56 -0.2 2,334,112 + A4249_RS11605 0.88 -0.3 2,334,112 + A4249_RS11605 0.88 -0.3 2,334,166 + -0.1 2,334,166 + +0.0 2,334,167 - +0.2 2,334,167 - +0.3 2,334,177 + +1.0 2,334,178 - -0.4 2,334,178 - -0.4 2,334,178 - +1.9 2,334,178 - -1.6 2,334,335 + -0.1 2,334,336 - +0.1 2,334,336 - +0.2 2,334,336 - -0.3
Or see this region's nucleotide sequence