Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08830

Experiment: Guanine 0.6617 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS08820 and A4249_RS08825 are separated by 69 nucleotidesA4249_RS08825 and A4249_RS08830 are separated by 103 nucleotidesA4249_RS08830 and A4249_RS08835 are separated by 104 nucleotides A4249_RS08820: A4249_RS08820 - bacterioferritin, at 1,767,707 to 1,768,207 _RS08820 A4249_RS08825: A4249_RS08825 - tryptophan-rich sensory protein, at 1,768,277 to 1,768,837 _RS08825 A4249_RS08830: A4249_RS08830 - elongation factor P, at 1,768,941 to 1,769,507 _RS08830 A4249_RS08835: A4249_RS08835 - inositol monophosphatase family protein, at 1,769,612 to 1,770,418 _RS08835 Position (kb) 1768 1769 1770Strain fitness (log2 ratio) -3 -2 -1 0 1at 1768.046 kb on + strand, within A4249_RS08820at 1768.046 kb on + strand, within A4249_RS08820at 1768.047 kb on - strand, within A4249_RS08820at 1768.047 kb on - strand, within A4249_RS08820at 1768.151 kb on + strand, within A4249_RS08820at 1768.152 kb on - strand, within A4249_RS08820at 1768.152 kb on - strand, within A4249_RS08820at 1768.152 kb on - strand, within A4249_RS08820at 1768.205 kb on + strandat 1768.205 kb on + strandat 1768.205 kb on + strandat 1768.206 kb on - strandat 1768.206 kb on - strandat 1768.206 kb on - strandat 1768.206 kb on - strandat 1768.206 kb on - strandat 1768.206 kb on - strandat 1768.474 kb on + strand, within A4249_RS08825at 1768.474 kb on + strand, within A4249_RS08825at 1768.474 kb on + strand, within A4249_RS08825at 1768.474 kb on + strand, within A4249_RS08825at 1768.475 kb on - strand, within A4249_RS08825at 1768.549 kb on - strand, within A4249_RS08825at 1768.599 kb on + strand, within A4249_RS08825at 1768.600 kb on - strand, within A4249_RS08825at 1768.600 kb on - strand, within A4249_RS08825at 1768.835 kb on + strandat 1768.835 kb on + strandat 1768.835 kb on + strandat 1768.835 kb on + strandat 1768.835 kb on + strandat 1768.835 kb on + strandat 1768.835 kb on + strandat 1768.835 kb on + strandat 1768.835 kb on + strandat 1768.836 kb on - strandat 1768.836 kb on - strandat 1768.836 kb on - strandat 1768.836 kb on - strandat 1768.836 kb on - strandat 1768.836 kb on - strandat 1768.836 kb on - strandat 1768.836 kb on - strandat 1768.858 kb on - strandat 1768.873 kb on - strandat 1768.873 kb on - strandat 1769.205 kb on + strand, within A4249_RS08830at 1769.439 kb on + strand, within A4249_RS08830at 1769.441 kb on + strand, within A4249_RS08830at 1769.505 kb on + strandat 1769.505 kb on + strandat 1769.506 kb on - strandat 1769.521 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanine 0.6617 mM (C)
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1,768,046 + A4249_RS08820 0.68 -0.3
1,768,046 + A4249_RS08820 0.68 +0.1
1,768,047 - A4249_RS08820 0.68 -1.9
1,768,047 - A4249_RS08820 0.68 +0.6
1,768,151 + A4249_RS08820 0.89 -0.5
1,768,152 - A4249_RS08820 0.89 -0.7
1,768,152 - A4249_RS08820 0.89 -0.7
1,768,152 - A4249_RS08820 0.89 -0.7
1,768,205 + -0.4
1,768,205 + -0.8
1,768,205 + -3.2
1,768,206 - -0.3
1,768,206 - +0.5
1,768,206 - +0.3
1,768,206 - -0.0
1,768,206 - +0.5
1,768,206 - +0.7
1,768,474 + A4249_RS08825 0.35 -0.6
1,768,474 + A4249_RS08825 0.35 +0.1
1,768,474 + A4249_RS08825 0.35 +0.4
1,768,474 + A4249_RS08825 0.35 -0.3
1,768,475 - A4249_RS08825 0.35 -0.5
1,768,549 - A4249_RS08825 0.48 -0.1
1,768,599 + A4249_RS08825 0.57 +0.8
1,768,600 - A4249_RS08825 0.58 -0.0
1,768,600 - A4249_RS08825 0.58 +0.8
1,768,835 + +0.3
1,768,835 + -0.2
1,768,835 + +0.2
1,768,835 + -0.8
1,768,835 + -0.0
1,768,835 + +0.5
1,768,835 + +0.3
1,768,835 + -1.7
1,768,835 + +0.8
1,768,836 - +0.2
1,768,836 - +0.5
1,768,836 - -1.4
1,768,836 - -1.2
1,768,836 - +0.2
1,768,836 - -0.1
1,768,836 - +0.2
1,768,836 - +0.1
1,768,858 - +1.1
1,768,873 - -0.3
1,768,873 - +0.5
1,769,205 + A4249_RS08830 0.47 +1.5
1,769,439 + A4249_RS08830 0.88 -1.0
1,769,441 + A4249_RS08830 0.88 +0.7
1,769,505 + +0.3
1,769,505 + +1.3
1,769,506 - +0.9
1,769,521 + -0.1

Or see this region's nucleotide sequence