Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08465

Experiment: Guanine 0.6617 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS08455 and A4249_RS08460 are separated by 140 nucleotidesA4249_RS08460 and A4249_RS08465 are separated by 134 nucleotidesA4249_RS08465 and A4249_RS08470 are separated by 48 nucleotidesA4249_RS08470 and A4249_RS08475 are separated by 44 nucleotides A4249_RS08455: A4249_RS08455 - TolC family outer membrane protein, at 1,697,334 to 1,698,869 _RS08455 A4249_RS08460: A4249_RS08460 - protein-L-isoaspartate O-methyltransferase, at 1,699,010 to 1,699,639 _RS08460 A4249_RS08465: A4249_RS08465 - tRNA-Cys, at 1,699,774 to 1,699,847 _RS08465 A4249_RS08470: A4249_RS08470 - RNA methyltransferase, at 1,699,896 to 1,700,729 _RS08470 A4249_RS08475: A4249_RS08475 - tRNA-Asn, at 1,700,774 to 1,700,848 _RS08475 Position (kb) 1699 1700Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1698.921 kb on + strandat 1698.921 kb on + strandat 1698.921 kb on + strandat 1698.921 kb on + strandat 1698.922 kb on - strandat 1698.922 kb on - strandat 1698.922 kb on - strandat 1698.922 kb on - strandat 1698.952 kb on + strandat 1698.952 kb on + strandat 1698.953 kb on - strandat 1698.953 kb on - strandat 1698.953 kb on - strandat 1698.953 kb on - strandat 1699.011 kb on + strandat 1699.011 kb on + strandat 1699.012 kb on - strandat 1699.012 kb on - strandat 1699.012 kb on - strandat 1699.012 kb on - strandat 1699.012 kb on - strandat 1699.012 kb on - strandat 1699.012 kb on - strandat 1699.012 kb on - strandat 1699.643 kb on + strandat 1699.643 kb on + strandat 1699.644 kb on - strandat 1699.644 kb on - strandat 1699.644 kb on - strandat 1699.644 kb on - strandat 1699.687 kb on - strandat 1699.688 kb on + strandat 1699.688 kb on + strandat 1699.688 kb on + strandat 1699.688 kb on + strandat 1699.688 kb on + strandat 1699.688 kb on + strandat 1699.688 kb on + strandat 1699.689 kb on - strandat 1699.689 kb on - strandat 1699.689 kb on - strandat 1699.689 kb on - strandat 1699.689 kb on - strandat 1699.689 kb on - strandat 1699.689 kb on - strandat 1699.689 kb on - strandat 1699.689 kb on - strandat 1699.689 kb on - strandat 1699.689 kb on - strandat 1699.689 kb on - strandat 1699.986 kb on - strand, within A4249_RS08470at 1699.986 kb on - strand, within A4249_RS08470at 1700.081 kb on - strand, within A4249_RS08470at 1700.081 kb on - strand, within A4249_RS08470at 1700.228 kb on - strand, within A4249_RS08470at 1700.228 kb on - strand, within A4249_RS08470at 1700.228 kb on - strand, within A4249_RS08470at 1700.473 kb on + strand, within A4249_RS08470at 1700.473 kb on + strand, within A4249_RS08470at 1700.473 kb on + strand, within A4249_RS08470at 1700.473 kb on + strand, within A4249_RS08470at 1700.473 kb on + strand, within A4249_RS08470at 1700.474 kb on - strand, within A4249_RS08470at 1700.474 kb on - strand, within A4249_RS08470at 1700.474 kb on - strand, within A4249_RS08470at 1700.474 kb on - strand, within A4249_RS08470at 1700.474 kb on - strand, within A4249_RS08470at 1700.474 kb on - strand, within A4249_RS08470at 1700.474 kb on - strand, within A4249_RS08470at 1700.474 kb on - strand, within A4249_RS08470at 1700.474 kb on - strand, within A4249_RS08470at 1700.659 kb on + strandat 1700.659 kb on + strandat 1700.693 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanine 0.6617 mM (C)
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1,698,921 + +0.1
1,698,921 + -0.2
1,698,921 + -0.7
1,698,921 + +0.2
1,698,922 - -0.1
1,698,922 - -0.9
1,698,922 - +0.1
1,698,922 - -0.4
1,698,952 + -0.4
1,698,952 + +0.2
1,698,953 - +0.1
1,698,953 - +0.0
1,698,953 - +0.0
1,698,953 - -1.1
1,699,011 + +0.4
1,699,011 + -0.3
1,699,012 - +0.9
1,699,012 - +1.3
1,699,012 - +0.8
1,699,012 - +0.1
1,699,012 - +0.4
1,699,012 - -0.3
1,699,012 - -1.1
1,699,012 - +0.0
1,699,643 + +3.0
1,699,643 + +0.5
1,699,644 - +0.1
1,699,644 - -0.4
1,699,644 - +0.0
1,699,644 - -0.6
1,699,687 - -0.0
1,699,688 + +0.9
1,699,688 + +0.4
1,699,688 + -1.2
1,699,688 + +1.5
1,699,688 + -0.0
1,699,688 + -0.3
1,699,688 + -0.8
1,699,689 - -0.1
1,699,689 - +0.8
1,699,689 - -0.4
1,699,689 - -0.2
1,699,689 - +0.1
1,699,689 - +0.7
1,699,689 - +0.6
1,699,689 - +0.3
1,699,689 - +0.9
1,699,689 - +0.4
1,699,689 - -0.3
1,699,689 - +1.2
1,699,986 - A4249_RS08470 0.11 -1.3
1,699,986 - A4249_RS08470 0.11 -1.1
1,700,081 - A4249_RS08470 0.22 -2.3
1,700,081 - A4249_RS08470 0.22 +0.5
1,700,228 - A4249_RS08470 0.40 +0.0
1,700,228 - A4249_RS08470 0.40 -0.5
1,700,228 - A4249_RS08470 0.40 -0.1
1,700,473 + A4249_RS08470 0.69 -0.0
1,700,473 + A4249_RS08470 0.69 +0.6
1,700,473 + A4249_RS08470 0.69 +0.5
1,700,473 + A4249_RS08470 0.69 -2.3
1,700,473 + A4249_RS08470 0.69 +1.2
1,700,474 - A4249_RS08470 0.69 +0.5
1,700,474 - A4249_RS08470 0.69 -0.4
1,700,474 - A4249_RS08470 0.69 -1.2
1,700,474 - A4249_RS08470 0.69 -0.5
1,700,474 - A4249_RS08470 0.69 -1.1
1,700,474 - A4249_RS08470 0.69 +0.1
1,700,474 - A4249_RS08470 0.69 -0.3
1,700,474 - A4249_RS08470 0.69 -0.7
1,700,474 - A4249_RS08470 0.69 -0.6
1,700,659 + +0.2
1,700,659 + -1.5
1,700,693 + -0.2

Or see this region's nucleotide sequence