Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS05670

Experiment: Guanine 0.6617 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS05660 and A4249_RS05665 overlap by 4 nucleotidesA4249_RS05665 and A4249_RS05670 are separated by 99 nucleotidesA4249_RS05670 and A4249_RS05675 are separated by 80 nucleotidesA4249_RS05675 and A4249_RS05680 are separated by 114 nucleotides A4249_RS05660: A4249_RS05660 - Sec-independent protein translocase protein TatB, at 1,158,148 to 1,158,726 _RS05660 A4249_RS05665: A4249_RS05665 - twin-arginine translocase subunit TatC, at 1,158,723 to 1,159,613 _RS05665 A4249_RS05670: A4249_RS05670 - type I glutamate--ammonia ligase, at 1,159,713 to 1,161,119 _RS05670 A4249_RS05675: A4249_RS05675 - P-II family nitrogen regulator, at 1,161,200 to 1,161,538 _RS05675 A4249_RS05680: A4249_RS05680 - NAD(P)H-hydrate dehydratase, at 1,161,653 to 1,162,483 _RS05680 Position (kb) 1159 1160 1161 1162Strain fitness (log2 ratio) -1 0 1 2at 1159.642 kb on + strandat 1159.642 kb on + strandat 1159.642 kb on + strandat 1159.643 kb on - strandat 1159.643 kb on - strandat 1159.643 kb on - strandat 1159.643 kb on - strandat 1159.698 kb on - strandat 1159.698 kb on - strandat 1161.192 kb on + strandat 1161.193 kb on - strandat 1161.657 kb on + strandat 1161.657 kb on + strandat 1161.657 kb on + strandat 1161.657 kb on + strandat 1161.658 kb on - strandat 1161.658 kb on - strandat 1161.658 kb on - strandat 1161.658 kb on - strandat 1161.912 kb on + strand, within A4249_RS05680at 1161.912 kb on + strand, within A4249_RS05680at 1161.912 kb on + strand, within A4249_RS05680at 1161.913 kb on - strand, within A4249_RS05680at 1161.913 kb on - strand, within A4249_RS05680at 1161.913 kb on - strand, within A4249_RS05680at 1161.913 kb on - strand, within A4249_RS05680at 1161.966 kb on + strand, within A4249_RS05680at 1162.071 kb on + strand, within A4249_RS05680at 1162.071 kb on + strand, within A4249_RS05680at 1162.071 kb on + strand, within A4249_RS05680at 1162.071 kb on + strand, within A4249_RS05680at 1162.071 kb on + strand, within A4249_RS05680at 1162.072 kb on - strand, within A4249_RS05680at 1162.072 kb on - strand, within A4249_RS05680at 1162.072 kb on - strand, within A4249_RS05680at 1162.072 kb on - strand, within A4249_RS05680at 1162.072 kb on - strand, within A4249_RS05680at 1162.072 kb on - strand, within A4249_RS05680at 1162.072 kb on - strand, within A4249_RS05680

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanine 0.6617 mM (C)
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1,159,642 + +0.4
1,159,642 + +0.1
1,159,642 + +0.6
1,159,643 - -0.5
1,159,643 - -0.7
1,159,643 - +1.7
1,159,643 - +1.0
1,159,698 - -0.2
1,159,698 - -0.0
1,161,192 + +0.6
1,161,193 - +0.1
1,161,657 + +0.2
1,161,657 + -0.7
1,161,657 + -0.3
1,161,657 + +0.6
1,161,658 - -0.3
1,161,658 - -1.2
1,161,658 - +0.3
1,161,658 - +0.8
1,161,912 + A4249_RS05680 0.31 +0.8
1,161,912 + A4249_RS05680 0.31 -0.3
1,161,912 + A4249_RS05680 0.31 -1.0
1,161,913 - A4249_RS05680 0.31 -1.5
1,161,913 - A4249_RS05680 0.31 +0.2
1,161,913 - A4249_RS05680 0.31 +0.8
1,161,913 - A4249_RS05680 0.31 +1.0
1,161,966 + A4249_RS05680 0.38 -0.0
1,162,071 + A4249_RS05680 0.50 +1.5
1,162,071 + A4249_RS05680 0.50 +0.3
1,162,071 + A4249_RS05680 0.50 -0.8
1,162,071 + A4249_RS05680 0.50 -0.0
1,162,071 + A4249_RS05680 0.50 +1.8
1,162,072 - A4249_RS05680 0.50 -0.1
1,162,072 - A4249_RS05680 0.50 -0.6
1,162,072 - A4249_RS05680 0.50 +0.0
1,162,072 - A4249_RS05680 0.50 +0.1
1,162,072 - A4249_RS05680 0.50 +1.0
1,162,072 - A4249_RS05680 0.50 -1.2
1,162,072 - A4249_RS05680 0.50 +0.5

Or see this region's nucleotide sequence