Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS05515

Experiment: Guanine 0.6617 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS05505 and A4249_RS05510 overlap by 4 nucleotidesA4249_RS05510 and A4249_RS05515 are separated by 50 nucleotidesA4249_RS05515 and A4249_RS05520 are separated by 4 nucleotidesA4249_RS05520 and A4249_RS05525 overlap by 4 nucleotides A4249_RS05505: A4249_RS05505 - bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, at 1,123,809 to 1,125,968 _RS05505 A4249_RS05510: A4249_RS05510 - TIGR00730 family Rossman fold protein, at 1,125,965 to 1,126,723 _RS05510 A4249_RS05515: A4249_RS05515 - orotate phosphoribosyltransferase, at 1,126,774 to 1,127,358 _RS05515 A4249_RS05520: A4249_RS05520 - pyridoxine 5'-phosphate synthase, at 1,127,363 to 1,128,103 _RS05520 A4249_RS05525: A4249_RS05525 - holo-ACP synthase, at 1,128,100 to 1,128,501 _RS05525 Position (kb) 1126 1127 1128Strain fitness (log2 ratio) -2 -1 0 1 2at 1126.085 kb on + strand, within A4249_RS05510at 1126.085 kb on + strand, within A4249_RS05510at 1126.085 kb on + strand, within A4249_RS05510at 1126.085 kb on + strand, within A4249_RS05510at 1126.085 kb on + strand, within A4249_RS05510at 1126.085 kb on + strand, within A4249_RS05510at 1126.086 kb on - strand, within A4249_RS05510at 1126.086 kb on - strand, within A4249_RS05510at 1126.178 kb on + strand, within A4249_RS05510at 1126.178 kb on + strand, within A4249_RS05510at 1126.178 kb on + strand, within A4249_RS05510at 1126.179 kb on - strand, within A4249_RS05510at 1126.179 kb on - strand, within A4249_RS05510at 1126.382 kb on + strand, within A4249_RS05510at 1126.382 kb on + strand, within A4249_RS05510at 1126.415 kb on + strand, within A4249_RS05510at 1126.415 kb on + strand, within A4249_RS05510at 1126.415 kb on + strand, within A4249_RS05510at 1126.415 kb on + strand, within A4249_RS05510at 1126.415 kb on + strand, within A4249_RS05510at 1126.416 kb on - strand, within A4249_RS05510at 1126.416 kb on - strand, within A4249_RS05510at 1126.416 kb on - strand, within A4249_RS05510at 1126.571 kb on + strand, within A4249_RS05510at 1126.571 kb on + strand, within A4249_RS05510at 1126.572 kb on - strand, within A4249_RS05510at 1126.762 kb on + strandat 1126.762 kb on + strandat 1126.763 kb on - strandat 1127.356 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanine 0.6617 mM (C)
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1,126,085 + A4249_RS05510 0.16 -0.1
1,126,085 + A4249_RS05510 0.16 +1.3
1,126,085 + A4249_RS05510 0.16 -0.2
1,126,085 + A4249_RS05510 0.16 +0.6
1,126,085 + A4249_RS05510 0.16 +0.1
1,126,085 + A4249_RS05510 0.16 -0.4
1,126,086 - A4249_RS05510 0.16 -0.2
1,126,086 - A4249_RS05510 0.16 +0.8
1,126,178 + A4249_RS05510 0.28 -1.0
1,126,178 + A4249_RS05510 0.28 -0.1
1,126,178 + A4249_RS05510 0.28 +2.6
1,126,179 - A4249_RS05510 0.28 +0.3
1,126,179 - A4249_RS05510 0.28 -0.2
1,126,382 + A4249_RS05510 0.55 +0.4
1,126,382 + A4249_RS05510 0.55 +0.2
1,126,415 + A4249_RS05510 0.59 -0.0
1,126,415 + A4249_RS05510 0.59 -0.4
1,126,415 + A4249_RS05510 0.59 -0.5
1,126,415 + A4249_RS05510 0.59 +1.4
1,126,415 + A4249_RS05510 0.59 -0.2
1,126,416 - A4249_RS05510 0.59 +0.3
1,126,416 - A4249_RS05510 0.59 -2.0
1,126,416 - A4249_RS05510 0.59 +1.0
1,126,571 + A4249_RS05510 0.80 -0.0
1,126,571 + A4249_RS05510 0.80 +0.7
1,126,572 - A4249_RS05510 0.80 +0.4
1,126,762 + +0.2
1,126,762 + -0.4
1,126,763 - +0.7
1,127,356 + -0.0

Or see this region's nucleotide sequence