Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS04125

Experiment: Guanine 0.6617 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS04120 and A4249_RS04125 are separated by 52 nucleotidesA4249_RS04125 and A4249_RS04130 overlap by 1 nucleotides A4249_RS04120: A4249_RS04120 - cisplatin damage response ATP-dependent DNA ligase, at 856,103 to 857,791 _RS04120 A4249_RS04125: A4249_RS04125 - mechanosensitive ion channel family protein, at 857,844 to 858,797 _RS04125 A4249_RS04130: A4249_RS04130 - beta-eliminating lyase-related protein, at 858,797 to 859,813 _RS04130 Position (kb) 857 858 859Strain fitness (log2 ratio) -2 -1 0 1at 856.861 kb on - strand, within A4249_RS04120at 856.861 kb on - strand, within A4249_RS04120at 856.861 kb on - strand, within A4249_RS04120at 856.861 kb on - strand, within A4249_RS04120at 856.878 kb on + strand, within A4249_RS04120at 856.878 kb on + strand, within A4249_RS04120at 856.879 kb on - strand, within A4249_RS04120at 856.879 kb on - strand, within A4249_RS04120at 856.879 kb on - strand, within A4249_RS04120at 856.901 kb on + strand, within A4249_RS04120at 856.902 kb on - strand, within A4249_RS04120at 857.041 kb on + strand, within A4249_RS04120at 857.041 kb on + strand, within A4249_RS04120at 857.099 kb on + strand, within A4249_RS04120at 857.099 kb on + strand, within A4249_RS04120at 857.099 kb on + strand, within A4249_RS04120at 857.100 kb on - strand, within A4249_RS04120at 857.188 kb on + strand, within A4249_RS04120at 857.188 kb on + strand, within A4249_RS04120at 857.225 kb on + strand, within A4249_RS04120at 857.225 kb on + strand, within A4249_RS04120at 857.225 kb on + strand, within A4249_RS04120at 857.226 kb on - strand, within A4249_RS04120at 857.226 kb on - strand, within A4249_RS04120at 857.226 kb on - strand, within A4249_RS04120at 857.226 kb on - strand, within A4249_RS04120at 857.319 kb on - strand, within A4249_RS04120at 857.393 kb on + strand, within A4249_RS04120at 857.393 kb on + strand, within A4249_RS04120at 857.393 kb on + strand, within A4249_RS04120at 857.393 kb on + strand, within A4249_RS04120at 857.393 kb on + strand, within A4249_RS04120at 857.393 kb on + strand, within A4249_RS04120at 857.393 kb on + strand, within A4249_RS04120at 857.393 kb on + strand, within A4249_RS04120at 857.393 kb on + strand, within A4249_RS04120at 857.394 kb on - strand, within A4249_RS04120at 857.394 kb on - strand, within A4249_RS04120at 857.394 kb on - strand, within A4249_RS04120at 857.429 kb on + strand, within A4249_RS04120at 857.429 kb on + strand, within A4249_RS04120at 857.430 kb on - strand, within A4249_RS04120at 857.430 kb on - strand, within A4249_RS04120at 857.430 kb on - strand, within A4249_RS04120at 857.438 kb on + strand, within A4249_RS04120at 857.438 kb on + strand, within A4249_RS04120at 857.439 kb on - strand, within A4249_RS04120at 857.492 kb on + strand, within A4249_RS04120at 857.493 kb on - strand, within A4249_RS04120at 857.493 kb on - strand, within A4249_RS04120at 857.503 kb on + strand, within A4249_RS04120at 857.736 kb on + strandat 857.736 kb on + strandat 857.736 kb on + strandat 857.736 kb on + strandat 857.737 kb on - strandat 857.737 kb on - strandat 857.737 kb on - strandat 857.737 kb on - strandat 857.737 kb on - strandat 857.737 kb on - strandat 858.035 kb on + strand, within A4249_RS04125at 858.035 kb on + strand, within A4249_RS04125at 858.035 kb on + strand, within A4249_RS04125at 858.036 kb on - strand, within A4249_RS04125at 858.036 kb on - strand, within A4249_RS04125at 858.036 kb on - strand, within A4249_RS04125at 858.036 kb on - strand, within A4249_RS04125at 858.036 kb on - strand, within A4249_RS04125at 858.245 kb on + strand, within A4249_RS04125at 859.022 kb on + strand, within A4249_RS04130at 859.022 kb on + strand, within A4249_RS04130at 859.022 kb on + strand, within A4249_RS04130at 859.023 kb on - strand, within A4249_RS04130at 859.023 kb on - strand, within A4249_RS04130at 859.023 kb on - strand, within A4249_RS04130at 859.023 kb on - strand, within A4249_RS04130at 859.023 kb on - strand, within A4249_RS04130at 859.023 kb on - strand, within A4249_RS04130at 859.023 kb on - strand, within A4249_RS04130at 859.023 kb on - strand, within A4249_RS04130at 859.023 kb on - strand, within A4249_RS04130at 859.023 kb on - strand, within A4249_RS04130at 859.023 kb on - strand, within A4249_RS04130at 859.023 kb on - strand, within A4249_RS04130at 859.229 kb on + strand, within A4249_RS04130at 859.229 kb on + strand, within A4249_RS04130at 859.229 kb on + strand, within A4249_RS04130at 859.229 kb on + strand, within A4249_RS04130at 859.230 kb on - strand, within A4249_RS04130at 859.230 kb on - strand, within A4249_RS04130at 859.230 kb on - strand, within A4249_RS04130at 859.242 kb on - strand, within A4249_RS04130at 859.292 kb on + strand, within A4249_RS04130at 859.293 kb on - strand, within A4249_RS04130at 859.578 kb on + strand, within A4249_RS04130at 859.578 kb on + strand, within A4249_RS04130at 859.715 kb on + strandat 859.715 kb on + strandat 859.715 kb on + strandat 859.716 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanine 0.6617 mM (C)
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856,861 - A4249_RS04120 0.45 -0.5
856,861 - A4249_RS04120 0.45 +0.1
856,861 - A4249_RS04120 0.45 -0.7
856,861 - A4249_RS04120 0.45 -0.0
856,878 + A4249_RS04120 0.46 +0.0
856,878 + A4249_RS04120 0.46 +0.3
856,879 - A4249_RS04120 0.46 +1.5
856,879 - A4249_RS04120 0.46 -0.5
856,879 - A4249_RS04120 0.46 +0.0
856,901 + A4249_RS04120 0.47 +0.2
856,902 - A4249_RS04120 0.47 +0.5
857,041 + A4249_RS04120 0.56 -1.6
857,041 + A4249_RS04120 0.56 -1.1
857,099 + A4249_RS04120 0.59 +0.6
857,099 + A4249_RS04120 0.59 -1.9
857,099 + A4249_RS04120 0.59 +0.0
857,100 - A4249_RS04120 0.59 +0.1
857,188 + A4249_RS04120 0.64 -0.4
857,188 + A4249_RS04120 0.64 -0.2
857,225 + A4249_RS04120 0.66 -0.3
857,225 + A4249_RS04120 0.66 -0.4
857,225 + A4249_RS04120 0.66 -0.5
857,226 - A4249_RS04120 0.66 +0.3
857,226 - A4249_RS04120 0.66 -0.4
857,226 - A4249_RS04120 0.66 -1.0
857,226 - A4249_RS04120 0.66 +0.7
857,319 - A4249_RS04120 0.72 +0.4
857,393 + A4249_RS04120 0.76 +0.3
857,393 + A4249_RS04120 0.76 -0.9
857,393 + A4249_RS04120 0.76 -0.8
857,393 + A4249_RS04120 0.76 +0.4
857,393 + A4249_RS04120 0.76 -0.3
857,393 + A4249_RS04120 0.76 -0.4
857,393 + A4249_RS04120 0.76 -0.0
857,393 + A4249_RS04120 0.76 -1.1
857,393 + A4249_RS04120 0.76 +0.2
857,394 - A4249_RS04120 0.76 +0.1
857,394 - A4249_RS04120 0.76 -0.8
857,394 - A4249_RS04120 0.76 -0.2
857,429 + A4249_RS04120 0.79 -0.6
857,429 + A4249_RS04120 0.79 -0.4
857,430 - A4249_RS04120 0.79 -0.1
857,430 - A4249_RS04120 0.79 +1.4
857,430 - A4249_RS04120 0.79 -0.9
857,438 + A4249_RS04120 0.79 -1.1
857,438 + A4249_RS04120 0.79 -0.3
857,439 - A4249_RS04120 0.79 -0.5
857,492 + A4249_RS04120 0.82 -0.8
857,493 - A4249_RS04120 0.82 -0.0
857,493 - A4249_RS04120 0.82 -0.4
857,503 + A4249_RS04120 0.83 +0.5
857,736 + +0.4
857,736 + -1.3
857,736 + +0.3
857,736 + +0.7
857,737 - -0.7
857,737 - -0.7
857,737 - -0.3
857,737 - +1.3
857,737 - +0.0
857,737 - -1.0
858,035 + A4249_RS04125 0.20 +0.4
858,035 + A4249_RS04125 0.20 +1.4
858,035 + A4249_RS04125 0.20 +0.4
858,036 - A4249_RS04125 0.20 -0.3
858,036 - A4249_RS04125 0.20 -0.8
858,036 - A4249_RS04125 0.20 +0.7
858,036 - A4249_RS04125 0.20 -2.3
858,036 - A4249_RS04125 0.20 +0.3
858,245 + A4249_RS04125 0.42 -0.8
859,022 + A4249_RS04130 0.22 -0.4
859,022 + A4249_RS04130 0.22 +0.6
859,022 + A4249_RS04130 0.22 -0.7
859,023 - A4249_RS04130 0.22 -0.2
859,023 - A4249_RS04130 0.22 +0.3
859,023 - A4249_RS04130 0.22 +0.4
859,023 - A4249_RS04130 0.22 +0.6
859,023 - A4249_RS04130 0.22 -0.1
859,023 - A4249_RS04130 0.22 +0.1
859,023 - A4249_RS04130 0.22 +0.4
859,023 - A4249_RS04130 0.22 +0.1
859,023 - A4249_RS04130 0.22 +0.2
859,023 - A4249_RS04130 0.22 +0.5
859,023 - A4249_RS04130 0.22 -0.3
859,023 - A4249_RS04130 0.22 +1.3
859,229 + A4249_RS04130 0.42 +0.4
859,229 + A4249_RS04130 0.42 -0.6
859,229 + A4249_RS04130 0.42 -0.3
859,229 + A4249_RS04130 0.42 -0.4
859,230 - A4249_RS04130 0.43 +0.9
859,230 - A4249_RS04130 0.43 +0.6
859,230 - A4249_RS04130 0.43 -0.3
859,242 - A4249_RS04130 0.44 -0.0
859,292 + A4249_RS04130 0.49 -0.3
859,293 - A4249_RS04130 0.49 +0.7
859,578 + A4249_RS04130 0.77 +0.3
859,578 + A4249_RS04130 0.77 -1.2
859,715 + +0.2
859,715 + -0.1
859,715 + +0.1
859,716 - +0.8

Or see this region's nucleotide sequence