Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS03250

Experiment: Guanine 0.6617 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS03245 and A4249_RS03250 are separated by 7 nucleotidesA4249_RS03250 and A4249_RS16495 are separated by 45 nucleotidesA4249_RS16495 and A4249_RS16725 are separated by 158 nucleotidesA4249_RS16725 and A4249_RS03260 overlap by 38 nucleotides A4249_RS03245: A4249_RS03245 - PepSY-associated TM helix domain-containing protein, at 681,995 to 683,038 _RS03245 A4249_RS03250: A4249_RS03250 - TonB-dependent receptor, at 683,046 to 684,938 _RS03250 A4249_RS16495: A4249_RS16495 - hypothetical protein, at 684,984 to 685,178 _RS16495 A4249_RS16725: A4249_RS16725 - hypothetical protein, at 685,337 to 685,726 _RS16725 A4249_RS03260: A4249_RS03260 - acyltransferase, at 685,689 to 686,849 _RS03260 Position (kb) 683 684 685Strain fitness (log2 ratio) -2 -1 0 1 2at 682.109 kb on - strand, within A4249_RS03245at 682.110 kb on + strand, within A4249_RS03245at 682.110 kb on + strand, within A4249_RS03245at 682.110 kb on + strand, within A4249_RS03245at 682.110 kb on + strand, within A4249_RS03245at 682.110 kb on + strand, within A4249_RS03245at 682.110 kb on + strand, within A4249_RS03245at 682.110 kb on + strand, within A4249_RS03245at 682.110 kb on + strand, within A4249_RS03245at 682.110 kb on + strand, within A4249_RS03245at 682.110 kb on + strand, within A4249_RS03245at 682.110 kb on + strand, within A4249_RS03245at 682.111 kb on - strand, within A4249_RS03245at 682.111 kb on - strand, within A4249_RS03245at 682.111 kb on - strand, within A4249_RS03245at 682.111 kb on - strand, within A4249_RS03245at 682.146 kb on + strand, within A4249_RS03245at 682.146 kb on + strand, within A4249_RS03245at 682.147 kb on - strand, within A4249_RS03245at 682.147 kb on - strand, within A4249_RS03245at 682.147 kb on - strand, within A4249_RS03245at 682.147 kb on - strand, within A4249_RS03245at 682.158 kb on + strand, within A4249_RS03245at 682.159 kb on - strand, within A4249_RS03245at 682.788 kb on + strand, within A4249_RS03245at 682.788 kb on + strand, within A4249_RS03245at 683.137 kb on + strandat 683.138 kb on - strandat 683.138 kb on - strandat 683.146 kb on + strandat 683.146 kb on + strandat 683.146 kb on + strandat 683.146 kb on + strandat 683.147 kb on - strandat 683.147 kb on - strandat 683.147 kb on - strandat 683.147 kb on - strandat 683.147 kb on - strandat 683.228 kb on + strandat 683.228 kb on + strandat 683.229 kb on - strandat 683.229 kb on - strandat 683.230 kb on + strandat 683.230 kb on + strandat 683.230 kb on + strandat 683.231 kb on - strandat 683.281 kb on + strand, within A4249_RS03250at 683.281 kb on + strand, within A4249_RS03250at 683.281 kb on + strand, within A4249_RS03250at 683.281 kb on + strand, within A4249_RS03250at 683.281 kb on + strand, within A4249_RS03250at 683.281 kb on + strand, within A4249_RS03250at 683.282 kb on - strand, within A4249_RS03250at 683.323 kb on + strand, within A4249_RS03250at 683.323 kb on + strand, within A4249_RS03250at 683.324 kb on - strand, within A4249_RS03250at 683.428 kb on + strand, within A4249_RS03250at 683.428 kb on + strand, within A4249_RS03250at 683.429 kb on - strand, within A4249_RS03250at 683.429 kb on - strand, within A4249_RS03250at 683.429 kb on - strand, within A4249_RS03250at 683.466 kb on + strand, within A4249_RS03250at 683.467 kb on - strand, within A4249_RS03250at 683.467 kb on - strand, within A4249_RS03250at 683.746 kb on + strand, within A4249_RS03250at 683.747 kb on - strand, within A4249_RS03250at 683.848 kb on + strand, within A4249_RS03250at 683.849 kb on - strand, within A4249_RS03250at 683.849 kb on - strand, within A4249_RS03250at 683.849 kb on - strand, within A4249_RS03250at 683.849 kb on - strand, within A4249_RS03250at 683.850 kb on + strand, within A4249_RS03250at 683.850 kb on + strand, within A4249_RS03250at 683.851 kb on - strand, within A4249_RS03250at 683.851 kb on - strand, within A4249_RS03250at 683.851 kb on - strand, within A4249_RS03250at 683.874 kb on - strand, within A4249_RS03250at 683.874 kb on - strand, within A4249_RS03250at 683.874 kb on - strand, within A4249_RS03250at 683.874 kb on - strand, within A4249_RS03250at 684.016 kb on + strand, within A4249_RS03250at 684.016 kb on + strand, within A4249_RS03250at 684.017 kb on - strand, within A4249_RS03250at 684.017 kb on - strand, within A4249_RS03250at 684.017 kb on - strand, within A4249_RS03250at 684.199 kb on - strand, within A4249_RS03250at 684.199 kb on - strand, within A4249_RS03250at 684.208 kb on + strand, within A4249_RS03250at 684.208 kb on + strand, within A4249_RS03250at 684.265 kb on + strand, within A4249_RS03250at 684.265 kb on + strand, within A4249_RS03250at 684.266 kb on - strand, within A4249_RS03250at 684.373 kb on + strand, within A4249_RS03250at 684.373 kb on + strand, within A4249_RS03250at 684.373 kb on + strand, within A4249_RS03250at 684.373 kb on + strand, within A4249_RS03250at 684.373 kb on + strand, within A4249_RS03250at 684.373 kb on + strand, within A4249_RS03250at 684.374 kb on - strand, within A4249_RS03250at 684.374 kb on - strand, within A4249_RS03250at 684.374 kb on - strand, within A4249_RS03250at 684.374 kb on - strand, within A4249_RS03250at 684.374 kb on - strand, within A4249_RS03250at 684.532 kb on + strand, within A4249_RS03250at 684.532 kb on + strand, within A4249_RS03250at 684.532 kb on + strand, within A4249_RS03250at 684.532 kb on + strand, within A4249_RS03250at 684.532 kb on + strand, within A4249_RS03250at 684.532 kb on + strand, within A4249_RS03250at 684.532 kb on + strand, within A4249_RS03250at 684.532 kb on + strand, within A4249_RS03250at 684.532 kb on + strand, within A4249_RS03250at 684.532 kb on + strand, within A4249_RS03250at 684.532 kb on + strand, within A4249_RS03250at 684.533 kb on - strand, within A4249_RS03250at 684.533 kb on - strand, within A4249_RS03250at 684.533 kb on - strand, within A4249_RS03250at 684.533 kb on - strand, within A4249_RS03250at 684.533 kb on - strand, within A4249_RS03250at 684.533 kb on - strand, within A4249_RS03250at 684.533 kb on - strand, within A4249_RS03250at 684.533 kb on - strand, within A4249_RS03250at 684.533 kb on - strand, within A4249_RS03250at 684.533 kb on - strand, within A4249_RS03250at 684.536 kb on - strand, within A4249_RS03250at 684.536 kb on - strand, within A4249_RS03250at 684.536 kb on - strand, within A4249_RS03250at 684.715 kb on + strand, within A4249_RS03250at 684.715 kb on + strand, within A4249_RS03250at 684.715 kb on + strand, within A4249_RS03250at 684.715 kb on + strand, within A4249_RS03250at 684.715 kb on + strand, within A4249_RS03250at 684.715 kb on + strand, within A4249_RS03250at 684.716 kb on - strand, within A4249_RS03250at 684.716 kb on - strand, within A4249_RS03250at 684.716 kb on - strand, within A4249_RS03250at 684.716 kb on - strand, within A4249_RS03250at 684.716 kb on - strand, within A4249_RS03250at 684.716 kb on - strand, within A4249_RS03250at 684.716 kb on - strand, within A4249_RS03250at 684.716 kb on - strand, within A4249_RS03250at 684.716 kb on - strand, within A4249_RS03250at 684.716 kb on - strand, within A4249_RS03250at 684.716 kb on - strand, within A4249_RS03250at 684.808 kb on + strandat 684.808 kb on + strandat 684.808 kb on + strandat 684.808 kb on + strandat 684.809 kb on - strandat 684.865 kb on + strandat 684.866 kb on - strandat 684.953 kb on + strandat 684.985 kb on + strandat 684.985 kb on + strandat 684.986 kb on - strandat 685.346 kb on + strandat 685.346 kb on + strandat 685.346 kb on + strandat 685.346 kb on + strandat 685.346 kb on + strandat 685.346 kb on + strandat 685.346 kb on + strandat 685.346 kb on + strandat 685.346 kb on + strandat 685.347 kb on - strandat 685.347 kb on - strandat 685.347 kb on - strandat 685.364 kb on + strandat 685.364 kb on + strandat 685.364 kb on + strandat 685.365 kb on - strandat 685.365 kb on - strandat 685.365 kb on - strandat 685.365 kb on - strandat 685.365 kb on - strandat 685.365 kb on - strandat 685.399 kb on - strand, within A4249_RS16725at 685.399 kb on - strand, within A4249_RS16725at 685.399 kb on - strand, within A4249_RS16725at 685.773 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanine 0.6617 mM (C)
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682,109 - A4249_RS03245 0.11 -0.5
682,110 + A4249_RS03245 0.11 -0.2
682,110 + A4249_RS03245 0.11 +0.5
682,110 + A4249_RS03245 0.11 -0.3
682,110 + A4249_RS03245 0.11 -0.4
682,110 + A4249_RS03245 0.11 +0.3
682,110 + A4249_RS03245 0.11 +0.2
682,110 + A4249_RS03245 0.11 -0.8
682,110 + A4249_RS03245 0.11 +0.6
682,110 + A4249_RS03245 0.11 -0.0
682,110 + A4249_RS03245 0.11 +0.9
682,110 + A4249_RS03245 0.11 +0.2
682,111 - A4249_RS03245 0.11 +0.1
682,111 - A4249_RS03245 0.11 -0.4
682,111 - A4249_RS03245 0.11 +0.3
682,111 - A4249_RS03245 0.11 -0.4
682,146 + A4249_RS03245 0.14 -0.4
682,146 + A4249_RS03245 0.14 +1.2
682,147 - A4249_RS03245 0.15 +2.2
682,147 - A4249_RS03245 0.15 +0.0
682,147 - A4249_RS03245 0.15 +0.6
682,147 - A4249_RS03245 0.15 +0.1
682,158 + A4249_RS03245 0.16 +0.3
682,159 - A4249_RS03245 0.16 -0.1
682,788 + A4249_RS03245 0.76 -0.6
682,788 + A4249_RS03245 0.76 +0.2
683,137 + -0.6
683,138 - -0.2
683,138 - +0.1
683,146 + +0.6
683,146 + +0.6
683,146 + -0.5
683,146 + +1.2
683,147 - +1.0
683,147 - +0.1
683,147 - -0.1
683,147 - -0.8
683,147 - +0.1
683,228 + +0.2
683,228 + +0.2
683,229 - -0.6
683,229 - -0.7
683,230 + -0.8
683,230 + +1.5
683,230 + +0.4
683,231 - -0.1
683,281 + A4249_RS03250 0.12 +1.9
683,281 + A4249_RS03250 0.12 +0.4
683,281 + A4249_RS03250 0.12 +0.4
683,281 + A4249_RS03250 0.12 -1.4
683,281 + A4249_RS03250 0.12 +0.1
683,281 + A4249_RS03250 0.12 -0.5
683,282 - A4249_RS03250 0.12 +0.0
683,323 + A4249_RS03250 0.15 -0.9
683,323 + A4249_RS03250 0.15 +0.7
683,324 - A4249_RS03250 0.15 -0.2
683,428 + A4249_RS03250 0.20 -2.1
683,428 + A4249_RS03250 0.20 -0.0
683,429 - A4249_RS03250 0.20 -0.6
683,429 - A4249_RS03250 0.20 -0.5
683,429 - A4249_RS03250 0.20 -0.1
683,466 + A4249_RS03250 0.22 +0.2
683,467 - A4249_RS03250 0.22 +0.1
683,467 - A4249_RS03250 0.22 -0.5
683,746 + A4249_RS03250 0.37 -1.4
683,747 - A4249_RS03250 0.37 +0.6
683,848 + A4249_RS03250 0.42 -0.1
683,849 - A4249_RS03250 0.42 +0.3
683,849 - A4249_RS03250 0.42 +0.7
683,849 - A4249_RS03250 0.42 -0.9
683,849 - A4249_RS03250 0.42 +0.7
683,850 + A4249_RS03250 0.42 +0.1
683,850 + A4249_RS03250 0.42 -1.5
683,851 - A4249_RS03250 0.43 +0.3
683,851 - A4249_RS03250 0.43 -0.2
683,851 - A4249_RS03250 0.43 -1.2
683,874 - A4249_RS03250 0.44 +0.1
683,874 - A4249_RS03250 0.44 -0.2
683,874 - A4249_RS03250 0.44 +0.1
683,874 - A4249_RS03250 0.44 -0.2
684,016 + A4249_RS03250 0.51 +0.2
684,016 + A4249_RS03250 0.51 -0.5
684,017 - A4249_RS03250 0.51 -1.1
684,017 - A4249_RS03250 0.51 -0.4
684,017 - A4249_RS03250 0.51 +0.7
684,199 - A4249_RS03250 0.61 -0.7
684,199 - A4249_RS03250 0.61 -0.3
684,208 + A4249_RS03250 0.61 -0.4
684,208 + A4249_RS03250 0.61 -0.1
684,265 + A4249_RS03250 0.64 +1.4
684,265 + A4249_RS03250 0.64 +0.4
684,266 - A4249_RS03250 0.64 +0.4
684,373 + A4249_RS03250 0.70 +0.0
684,373 + A4249_RS03250 0.70 -0.7
684,373 + A4249_RS03250 0.70 +1.3
684,373 + A4249_RS03250 0.70 +0.1
684,373 + A4249_RS03250 0.70 -1.7
684,373 + A4249_RS03250 0.70 +0.5
684,374 - A4249_RS03250 0.70 +0.2
684,374 - A4249_RS03250 0.70 +0.1
684,374 - A4249_RS03250 0.70 -1.2
684,374 - A4249_RS03250 0.70 +0.3
684,374 - A4249_RS03250 0.70 +0.4
684,532 + A4249_RS03250 0.78 -0.6
684,532 + A4249_RS03250 0.78 -0.7
684,532 + A4249_RS03250 0.78 +0.7
684,532 + A4249_RS03250 0.78 +0.1
684,532 + A4249_RS03250 0.78 +0.2
684,532 + A4249_RS03250 0.78 +0.5
684,532 + A4249_RS03250 0.78 -0.2
684,532 + A4249_RS03250 0.78 -0.2
684,532 + A4249_RS03250 0.78 -0.5
684,532 + A4249_RS03250 0.78 -0.6
684,532 + A4249_RS03250 0.78 +0.1
684,533 - A4249_RS03250 0.79 -0.2
684,533 - A4249_RS03250 0.79 -0.2
684,533 - A4249_RS03250 0.79 +0.8
684,533 - A4249_RS03250 0.79 +0.1
684,533 - A4249_RS03250 0.79 +1.1
684,533 - A4249_RS03250 0.79 -1.4
684,533 - A4249_RS03250 0.79 +0.9
684,533 - A4249_RS03250 0.79 -0.6
684,533 - A4249_RS03250 0.79 +0.6
684,533 - A4249_RS03250 0.79 +1.2
684,536 - A4249_RS03250 0.79 -0.6
684,536 - A4249_RS03250 0.79 -0.1
684,536 - A4249_RS03250 0.79 -0.0
684,715 + A4249_RS03250 0.88 +1.0
684,715 + A4249_RS03250 0.88 -0.5
684,715 + A4249_RS03250 0.88 -0.5
684,715 + A4249_RS03250 0.88 +0.2
684,715 + A4249_RS03250 0.88 -0.4
684,715 + A4249_RS03250 0.88 +0.3
684,716 - A4249_RS03250 0.88 -0.7
684,716 - A4249_RS03250 0.88 -0.3
684,716 - A4249_RS03250 0.88 +0.2
684,716 - A4249_RS03250 0.88 -0.5
684,716 - A4249_RS03250 0.88 -1.0
684,716 - A4249_RS03250 0.88 +1.3
684,716 - A4249_RS03250 0.88 -2.0
684,716 - A4249_RS03250 0.88 -0.1
684,716 - A4249_RS03250 0.88 +0.1
684,716 - A4249_RS03250 0.88 +0.6
684,716 - A4249_RS03250 0.88 +0.7
684,808 + -0.3
684,808 + +0.3
684,808 + +0.1
684,808 + +0.1
684,809 - +0.2
684,865 + +0.8
684,866 - +0.3
684,953 + +0.7
684,985 + +0.0
684,985 + +0.7
684,986 - -0.3
685,346 + -0.2
685,346 + -2.7
685,346 + +0.0
685,346 + +0.0
685,346 + -0.8
685,346 + -0.2
685,346 + +0.0
685,346 + -0.6
685,346 + -0.3
685,347 - +1.6
685,347 - +0.0
685,347 - +0.2
685,364 + +0.5
685,364 + -1.4
685,364 + -0.7
685,365 - -1.2
685,365 - -0.5
685,365 - +0.4
685,365 - +1.0
685,365 - -1.2
685,365 - +0.0
685,399 - A4249_RS16725 0.16 -1.8
685,399 - A4249_RS16725 0.16 -0.2
685,399 - A4249_RS16725 0.16 -1.1
685,773 + +0.2

Or see this region's nucleotide sequence