Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS02510

Experiment: Guanine 0.6617 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS02505 and A4249_RS02510 are separated by 105 nucleotidesA4249_RS02510 and A4249_RS02515 are separated by 17 nucleotides A4249_RS02505: A4249_RS02505 - glycine C-acetyltransferase, at 537,836 to 539,026 _RS02505 A4249_RS02510: A4249_RS02510 - L-threonine 3-dehydrogenase, at 539,132 to 540,184 _RS02510 A4249_RS02515: A4249_RS02515 - DNA topoisomerase IB, at 540,202 to 541,224 _RS02515 Position (kb) 539 540 541Strain fitness (log2 ratio) -2 -1 0 1 2at 538.397 kb on + strand, within A4249_RS02505at 538.397 kb on + strand, within A4249_RS02505at 538.397 kb on + strand, within A4249_RS02505at 538.397 kb on + strand, within A4249_RS02505at 538.397 kb on + strand, within A4249_RS02505at 538.398 kb on - strand, within A4249_RS02505at 538.398 kb on - strand, within A4249_RS02505at 538.398 kb on - strand, within A4249_RS02505at 538.398 kb on - strand, within A4249_RS02505at 538.398 kb on - strand, within A4249_RS02505at 538.398 kb on - strand, within A4249_RS02505at 538.400 kb on - strand, within A4249_RS02505at 538.439 kb on + strand, within A4249_RS02505at 538.439 kb on + strand, within A4249_RS02505at 538.439 kb on + strand, within A4249_RS02505at 538.439 kb on + strand, within A4249_RS02505at 538.439 kb on + strand, within A4249_RS02505at 538.440 kb on - strand, within A4249_RS02505at 538.440 kb on - strand, within A4249_RS02505at 538.514 kb on + strand, within A4249_RS02505at 538.515 kb on - strand, within A4249_RS02505at 538.637 kb on + strand, within A4249_RS02505at 538.638 kb on - strand, within A4249_RS02505at 538.638 kb on - strand, within A4249_RS02505at 538.762 kb on + strand, within A4249_RS02505at 538.763 kb on - strand, within A4249_RS02505at 538.883 kb on + strand, within A4249_RS02505at 538.883 kb on + strand, within A4249_RS02505at 538.883 kb on + strand, within A4249_RS02505at 538.883 kb on + strand, within A4249_RS02505at 538.884 kb on - strand, within A4249_RS02505at 538.884 kb on - strand, within A4249_RS02505at 538.884 kb on - strand, within A4249_RS02505at 538.884 kb on - strand, within A4249_RS02505at 538.979 kb on - strandat 539.024 kb on + strandat 539.024 kb on + strandat 539.025 kb on - strandat 539.025 kb on - strandat 539.025 kb on - strandat 539.125 kb on + strandat 539.125 kb on + strandat 539.125 kb on + strandat 539.125 kb on + strandat 539.125 kb on + strandat 539.125 kb on + strandat 539.126 kb on - strandat 539.126 kb on - strandat 539.126 kb on - strandat 539.126 kb on - strandat 539.126 kb on - strandat 539.126 kb on - strandat 539.131 kb on + strandat 539.132 kb on - strandat 539.132 kb on - strandat 539.567 kb on + strand, within A4249_RS02510at 539.568 kb on - strand, within A4249_RS02510at 539.568 kb on - strand, within A4249_RS02510at 539.674 kb on + strand, within A4249_RS02510at 539.675 kb on - strand, within A4249_RS02510at 539.791 kb on + strand, within A4249_RS02510at 539.791 kb on + strand, within A4249_RS02510at 539.791 kb on + strand, within A4249_RS02510at 539.791 kb on + strand, within A4249_RS02510at 539.792 kb on - strand, within A4249_RS02510at 539.792 kb on - strand, within A4249_RS02510at 539.792 kb on - strand, within A4249_RS02510at 539.792 kb on - strand, within A4249_RS02510at 540.008 kb on + strand, within A4249_RS02510at 540.101 kb on + strandat 540.172 kb on + strandat 540.172 kb on + strandat 540.172 kb on + strandat 540.193 kb on + strandat 540.193 kb on + strandat 540.317 kb on + strand, within A4249_RS02515at 540.317 kb on + strand, within A4249_RS02515at 540.317 kb on + strand, within A4249_RS02515at 540.317 kb on + strand, within A4249_RS02515at 540.317 kb on + strand, within A4249_RS02515at 540.317 kb on + strand, within A4249_RS02515at 540.317 kb on + strand, within A4249_RS02515at 540.317 kb on + strand, within A4249_RS02515at 540.317 kb on + strand, within A4249_RS02515at 540.318 kb on - strand, within A4249_RS02515at 540.318 kb on - strand, within A4249_RS02515at 540.318 kb on - strand, within A4249_RS02515at 540.512 kb on + strand, within A4249_RS02515at 540.512 kb on + strand, within A4249_RS02515at 540.513 kb on - strand, within A4249_RS02515at 540.513 kb on - strand, within A4249_RS02515at 540.513 kb on - strand, within A4249_RS02515at 540.513 kb on - strand, within A4249_RS02515at 540.513 kb on - strand, within A4249_RS02515at 540.566 kb on + strand, within A4249_RS02515at 540.566 kb on + strand, within A4249_RS02515at 540.619 kb on + strand, within A4249_RS02515at 540.619 kb on + strand, within A4249_RS02515at 540.734 kb on + strand, within A4249_RS02515at 540.734 kb on + strand, within A4249_RS02515at 540.735 kb on - strand, within A4249_RS02515at 540.755 kb on + strand, within A4249_RS02515at 540.756 kb on - strand, within A4249_RS02515at 540.953 kb on + strand, within A4249_RS02515at 540.953 kb on + strand, within A4249_RS02515at 540.954 kb on - strand, within A4249_RS02515at 540.993 kb on + strand, within A4249_RS02515at 541.166 kb on + strandat 541.166 kb on + strandat 541.166 kb on + strandat 541.166 kb on + strandat 541.166 kb on + strandat 541.166 kb on + strandat 541.166 kb on + strandat 541.167 kb on - strandat 541.167 kb on - strandat 541.167 kb on - strandat 541.167 kb on - strandat 541.167 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanine 0.6617 mM (C)
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538,397 + A4249_RS02505 0.47 -0.5
538,397 + A4249_RS02505 0.47 +0.3
538,397 + A4249_RS02505 0.47 -1.6
538,397 + A4249_RS02505 0.47 +0.1
538,397 + A4249_RS02505 0.47 +0.1
538,398 - A4249_RS02505 0.47 +1.0
538,398 - A4249_RS02505 0.47 +0.1
538,398 - A4249_RS02505 0.47 +1.2
538,398 - A4249_RS02505 0.47 -0.6
538,398 - A4249_RS02505 0.47 +0.3
538,398 - A4249_RS02505 0.47 -0.1
538,400 - A4249_RS02505 0.47 -0.8
538,439 + A4249_RS02505 0.51 -0.3
538,439 + A4249_RS02505 0.51 +0.8
538,439 + A4249_RS02505 0.51 -0.0
538,439 + A4249_RS02505 0.51 -0.8
538,439 + A4249_RS02505 0.51 -0.0
538,440 - A4249_RS02505 0.51 -1.0
538,440 - A4249_RS02505 0.51 -0.1
538,514 + A4249_RS02505 0.57 +0.0
538,515 - A4249_RS02505 0.57 -0.5
538,637 + A4249_RS02505 0.67 -0.8
538,638 - A4249_RS02505 0.67 +0.0
538,638 - A4249_RS02505 0.67 +0.5
538,762 + A4249_RS02505 0.78 +0.8
538,763 - A4249_RS02505 0.78 +0.9
538,883 + A4249_RS02505 0.88 +1.4
538,883 + A4249_RS02505 0.88 -0.3
538,883 + A4249_RS02505 0.88 +0.3
538,883 + A4249_RS02505 0.88 -0.7
538,884 - A4249_RS02505 0.88 +0.8
538,884 - A4249_RS02505 0.88 +0.6
538,884 - A4249_RS02505 0.88 +1.4
538,884 - A4249_RS02505 0.88 +0.4
538,979 - -0.6
539,024 + -1.5
539,024 + +0.0
539,025 - +0.7
539,025 - -0.3
539,025 - -0.8
539,125 + -0.1
539,125 + -0.5
539,125 + -0.4
539,125 + +0.0
539,125 + -0.3
539,125 + +1.2
539,126 - +0.9
539,126 - -0.2
539,126 - -0.7
539,126 - +1.0
539,126 - -1.1
539,126 - -0.0
539,131 + -0.2
539,132 - -0.5
539,132 - +0.1
539,567 + A4249_RS02510 0.41 +0.0
539,568 - A4249_RS02510 0.41 +0.4
539,568 - A4249_RS02510 0.41 -0.9
539,674 + A4249_RS02510 0.51 -1.3
539,675 - A4249_RS02510 0.52 +0.1
539,791 + A4249_RS02510 0.63 +0.7
539,791 + A4249_RS02510 0.63 -0.3
539,791 + A4249_RS02510 0.63 +0.3
539,791 + A4249_RS02510 0.63 +0.3
539,792 - A4249_RS02510 0.63 +0.9
539,792 - A4249_RS02510 0.63 -0.8
539,792 - A4249_RS02510 0.63 +0.4
539,792 - A4249_RS02510 0.63 -0.4
540,008 + A4249_RS02510 0.83 +0.3
540,101 + -0.7
540,172 + -0.5
540,172 + +1.0
540,172 + -0.0
540,193 + -0.5
540,193 + +0.3
540,317 + A4249_RS02515 0.11 +0.4
540,317 + A4249_RS02515 0.11 -2.7
540,317 + A4249_RS02515 0.11 +0.1
540,317 + A4249_RS02515 0.11 +0.6
540,317 + A4249_RS02515 0.11 -1.2
540,317 + A4249_RS02515 0.11 -0.1
540,317 + A4249_RS02515 0.11 -0.4
540,317 + A4249_RS02515 0.11 +0.0
540,317 + A4249_RS02515 0.11 +0.1
540,318 - A4249_RS02515 0.11 -0.7
540,318 - A4249_RS02515 0.11 +0.3
540,318 - A4249_RS02515 0.11 -0.1
540,512 + A4249_RS02515 0.30 -0.1
540,512 + A4249_RS02515 0.30 -2.0
540,513 - A4249_RS02515 0.30 -0.7
540,513 - A4249_RS02515 0.30 +0.6
540,513 - A4249_RS02515 0.30 +1.9
540,513 - A4249_RS02515 0.30 +0.5
540,513 - A4249_RS02515 0.30 +0.7
540,566 + A4249_RS02515 0.36 -0.3
540,566 + A4249_RS02515 0.36 -1.7
540,619 + A4249_RS02515 0.41 -1.2
540,619 + A4249_RS02515 0.41 -0.4
540,734 + A4249_RS02515 0.52 -0.2
540,734 + A4249_RS02515 0.52 -0.4
540,735 - A4249_RS02515 0.52 -0.3
540,755 + A4249_RS02515 0.54 -1.4
540,756 - A4249_RS02515 0.54 -0.0
540,953 + A4249_RS02515 0.73 +0.1
540,953 + A4249_RS02515 0.73 +0.7
540,954 - A4249_RS02515 0.74 -0.0
540,993 + A4249_RS02515 0.77 -0.4
541,166 + -0.7
541,166 + -0.4
541,166 + -0.4
541,166 + +0.6
541,166 + -0.9
541,166 + +0.5
541,166 + +0.0
541,167 - -0.4
541,167 - -0.5
541,167 - +0.5
541,167 - -0.2
541,167 - +0.3

Or see this region's nucleotide sequence