Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS02195

Experiment: Guanine 0.6617 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS02190 and A4249_RS02195 are separated by 21 nucleotidesA4249_RS02195 and A4249_RS02200 overlap by 4 nucleotides A4249_RS02190: A4249_RS02190 - outer membrane beta-barrel protein, at 461,911 to 463,194 _RS02190 A4249_RS02195: A4249_RS02195 - SDR family NAD(P)-dependent oxidoreductase, at 463,216 to 464,193 _RS02195 A4249_RS02200: A4249_RS02200 - UDP-glucose/GDP-mannose dehydrogenase family protein, at 464,190 to 465,512 _RS02200 Position (kb) 463 464 465Strain fitness (log2 ratio) -1 0 1 2at 462.335 kb on + strand, within A4249_RS02190at 462.335 kb on + strand, within A4249_RS02190at 462.335 kb on + strand, within A4249_RS02190at 462.336 kb on - strand, within A4249_RS02190at 462.336 kb on - strand, within A4249_RS02190at 462.336 kb on - strand, within A4249_RS02190at 462.370 kb on + strand, within A4249_RS02190at 462.370 kb on + strand, within A4249_RS02190at 462.370 kb on + strand, within A4249_RS02190at 462.370 kb on + strand, within A4249_RS02190at 462.370 kb on + strand, within A4249_RS02190at 462.370 kb on + strand, within A4249_RS02190at 462.370 kb on + strand, within A4249_RS02190at 462.370 kb on + strand, within A4249_RS02190at 462.371 kb on - strand, within A4249_RS02190at 462.371 kb on - strand, within A4249_RS02190at 462.371 kb on - strand, within A4249_RS02190at 462.371 kb on - strand, within A4249_RS02190at 462.371 kb on - strand, within A4249_RS02190at 462.371 kb on - strand, within A4249_RS02190at 462.371 kb on - strand, within A4249_RS02190at 462.371 kb on - strand, within A4249_RS02190at 462.371 kb on - strand, within A4249_RS02190at 462.371 kb on - strand, within A4249_RS02190at 462.444 kb on - strand, within A4249_RS02190at 462.500 kb on + strand, within A4249_RS02190at 462.501 kb on - strand, within A4249_RS02190at 462.593 kb on + strand, within A4249_RS02190at 462.593 kb on + strand, within A4249_RS02190at 462.593 kb on + strand, within A4249_RS02190at 462.594 kb on - strand, within A4249_RS02190at 462.740 kb on + strand, within A4249_RS02190at 462.740 kb on + strand, within A4249_RS02190at 462.741 kb on - strand, within A4249_RS02190at 462.741 kb on - strand, within A4249_RS02190at 462.741 kb on - strand, within A4249_RS02190at 462.741 kb on - strand, within A4249_RS02190at 462.963 kb on + strand, within A4249_RS02190at 462.963 kb on + strand, within A4249_RS02190at 462.963 kb on + strand, within A4249_RS02190at 462.963 kb on + strand, within A4249_RS02190at 462.963 kb on + strand, within A4249_RS02190at 462.963 kb on + strand, within A4249_RS02190at 462.963 kb on + strand, within A4249_RS02190at 462.964 kb on - strand, within A4249_RS02190at 462.964 kb on - strand, within A4249_RS02190at 462.964 kb on - strand, within A4249_RS02190at 462.964 kb on - strand, within A4249_RS02190at 462.964 kb on - strand, within A4249_RS02190at 462.964 kb on - strand, within A4249_RS02190at 462.964 kb on - strand, within A4249_RS02190at 463.040 kb on + strand, within A4249_RS02190at 463.064 kb on - strand, within A4249_RS02190at 463.230 kb on - strandat 463.325 kb on + strand, within A4249_RS02195

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanine 0.6617 mM (C)
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462,335 + A4249_RS02190 0.33 -1.4
462,335 + A4249_RS02190 0.33 -0.3
462,335 + A4249_RS02190 0.33 +0.1
462,336 - A4249_RS02190 0.33 +1.0
462,336 - A4249_RS02190 0.33 +0.3
462,336 - A4249_RS02190 0.33 +0.5
462,370 + A4249_RS02190 0.36 +0.2
462,370 + A4249_RS02190 0.36 -0.5
462,370 + A4249_RS02190 0.36 +0.4
462,370 + A4249_RS02190 0.36 +0.0
462,370 + A4249_RS02190 0.36 +0.3
462,370 + A4249_RS02190 0.36 -1.2
462,370 + A4249_RS02190 0.36 +0.0
462,370 + A4249_RS02190 0.36 -1.4
462,371 - A4249_RS02190 0.36 -1.0
462,371 - A4249_RS02190 0.36 -0.1
462,371 - A4249_RS02190 0.36 +0.1
462,371 - A4249_RS02190 0.36 -0.1
462,371 - A4249_RS02190 0.36 -1.1
462,371 - A4249_RS02190 0.36 -0.6
462,371 - A4249_RS02190 0.36 +0.2
462,371 - A4249_RS02190 0.36 -0.1
462,371 - A4249_RS02190 0.36 +0.8
462,371 - A4249_RS02190 0.36 -1.2
462,444 - A4249_RS02190 0.42 -0.6
462,500 + A4249_RS02190 0.46 -0.1
462,501 - A4249_RS02190 0.46 +0.4
462,593 + A4249_RS02190 0.53 -0.1
462,593 + A4249_RS02190 0.53 -0.0
462,593 + A4249_RS02190 0.53 -0.8
462,594 - A4249_RS02190 0.53 -0.3
462,740 + A4249_RS02190 0.65 +1.0
462,740 + A4249_RS02190 0.65 -0.2
462,741 - A4249_RS02190 0.65 +0.4
462,741 - A4249_RS02190 0.65 -0.7
462,741 - A4249_RS02190 0.65 +1.0
462,741 - A4249_RS02190 0.65 -0.0
462,963 + A4249_RS02190 0.82 -0.9
462,963 + A4249_RS02190 0.82 -0.2
462,963 + A4249_RS02190 0.82 +0.2
462,963 + A4249_RS02190 0.82 -0.6
462,963 + A4249_RS02190 0.82 +0.6
462,963 + A4249_RS02190 0.82 +0.2
462,963 + A4249_RS02190 0.82 +0.2
462,964 - A4249_RS02190 0.82 +0.5
462,964 - A4249_RS02190 0.82 -0.1
462,964 - A4249_RS02190 0.82 +0.2
462,964 - A4249_RS02190 0.82 +0.2
462,964 - A4249_RS02190 0.82 +0.1
462,964 - A4249_RS02190 0.82 -0.5
462,964 - A4249_RS02190 0.82 +1.0
463,040 + A4249_RS02190 0.88 -0.6
463,064 - A4249_RS02190 0.90 +0.3
463,230 - -0.8
463,325 + A4249_RS02195 0.11 +2.0

Or see this region's nucleotide sequence