Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS01430

Experiment: Guanine 0.6617 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS01420 and A4249_RS01425 overlap by 4 nucleotidesA4249_RS01425 and A4249_RS01430 overlap by 4 nucleotidesA4249_RS01430 and A4249_RS01435 are separated by 52 nucleotidesA4249_RS01435 and A4249_RS01440 are separated by 5 nucleotides A4249_RS01420: A4249_RS01420 - hypothetical protein, at 265,053 to 265,709 _RS01420 A4249_RS01425: A4249_RS01425 - hypothetical protein, at 265,706 to 266,212 _RS01425 A4249_RS01430: A4249_RS01430 - DUF2786 domain-containing protein, at 266,209 to 266,901 _RS01430 A4249_RS01435: A4249_RS01435 - hypothetical protein, at 266,954 to 267,148 _RS01435 A4249_RS01440: A4249_RS01440 - tyrosine-type recombinase/integrase, at 267,154 to 268,200 _RS01440 Position (kb) 266 267Strain fitness (log2 ratio) -2 -1 0 1 2at 265.209 kb on + strand, within A4249_RS01420at 265.255 kb on - strand, within A4249_RS01420at 265.276 kb on + strand, within A4249_RS01420at 265.276 kb on + strand, within A4249_RS01420at 265.277 kb on - strand, within A4249_RS01420at 265.277 kb on - strand, within A4249_RS01420at 265.277 kb on - strand, within A4249_RS01420at 265.277 kb on - strand, within A4249_RS01420at 265.277 kb on - strand, within A4249_RS01420at 265.308 kb on + strand, within A4249_RS01420at 265.309 kb on - strand, within A4249_RS01420at 265.309 kb on - strand, within A4249_RS01420at 265.309 kb on - strand, within A4249_RS01420at 265.309 kb on - strand, within A4249_RS01420at 265.309 kb on - strand, within A4249_RS01420at 265.315 kb on - strand, within A4249_RS01420at 265.365 kb on + strand, within A4249_RS01420at 265.365 kb on + strand, within A4249_RS01420at 265.366 kb on - strand, within A4249_RS01420at 265.366 kb on - strand, within A4249_RS01420at 265.366 kb on - strand, within A4249_RS01420at 265.366 kb on - strand, within A4249_RS01420at 265.374 kb on + strand, within A4249_RS01420at 265.374 kb on + strand, within A4249_RS01420at 265.375 kb on - strand, within A4249_RS01420at 265.375 kb on - strand, within A4249_RS01420at 265.608 kb on + strand, within A4249_RS01420at 265.609 kb on - strand, within A4249_RS01420at 265.609 kb on - strand, within A4249_RS01420at 265.676 kb on + strandat 265.677 kb on - strandat 265.677 kb on - strandat 265.730 kb on + strandat 265.730 kb on + strandat 265.730 kb on + strandat 265.730 kb on + strandat 265.730 kb on + strandat 265.731 kb on - strandat 265.731 kb on - strandat 265.731 kb on - strandat 265.731 kb on - strandat 265.731 kb on - strandat 265.731 kb on - strandat 265.814 kb on + strand, within A4249_RS01425at 265.814 kb on + strand, within A4249_RS01425at 265.814 kb on + strand, within A4249_RS01425at 265.814 kb on + strand, within A4249_RS01425at 265.814 kb on + strand, within A4249_RS01425at 265.815 kb on - strand, within A4249_RS01425at 265.815 kb on - strand, within A4249_RS01425at 265.815 kb on - strand, within A4249_RS01425at 265.815 kb on - strand, within A4249_RS01425at 265.883 kb on + strand, within A4249_RS01425at 265.883 kb on + strand, within A4249_RS01425at 265.883 kb on + strand, within A4249_RS01425at 265.883 kb on + strand, within A4249_RS01425at 265.883 kb on + strand, within A4249_RS01425at 265.884 kb on - strand, within A4249_RS01425at 265.884 kb on - strand, within A4249_RS01425at 265.884 kb on - strand, within A4249_RS01425at 265.884 kb on - strand, within A4249_RS01425at 265.884 kb on - strand, within A4249_RS01425at 265.904 kb on + strand, within A4249_RS01425at 265.905 kb on - strand, within A4249_RS01425at 266.226 kb on + strandat 266.226 kb on + strandat 266.227 kb on - strandat 266.227 kb on - strandat 266.227 kb on - strandat 266.332 kb on + strand, within A4249_RS01430at 266.332 kb on + strand, within A4249_RS01430at 266.333 kb on - strand, within A4249_RS01430at 266.333 kb on - strand, within A4249_RS01430at 266.333 kb on - strand, within A4249_RS01430at 266.337 kb on + strand, within A4249_RS01430at 266.337 kb on + strand, within A4249_RS01430at 266.337 kb on + strand, within A4249_RS01430at 266.337 kb on + strand, within A4249_RS01430at 266.337 kb on + strand, within A4249_RS01430at 266.337 kb on + strand, within A4249_RS01430at 266.337 kb on + strand, within A4249_RS01430at 266.337 kb on + strand, within A4249_RS01430at 266.337 kb on + strand, within A4249_RS01430at 266.337 kb on + strand, within A4249_RS01430at 266.338 kb on - strand, within A4249_RS01430at 266.338 kb on - strand, within A4249_RS01430at 266.338 kb on - strand, within A4249_RS01430at 266.338 kb on - strand, within A4249_RS01430at 266.338 kb on - strand, within A4249_RS01430at 266.338 kb on - strand, within A4249_RS01430at 266.338 kb on - strand, within A4249_RS01430at 266.338 kb on - strand, within A4249_RS01430at 266.338 kb on - strand, within A4249_RS01430at 266.338 kb on - strand, within A4249_RS01430at 266.540 kb on - strand, within A4249_RS01430at 266.540 kb on - strand, within A4249_RS01430at 266.540 kb on - strand, within A4249_RS01430at 266.540 kb on - strand, within A4249_RS01430at 266.540 kb on - strand, within A4249_RS01430at 266.540 kb on - strand, within A4249_RS01430at 267.175 kb on + strandat 267.175 kb on + strandat 267.175 kb on + strandat 267.175 kb on + strandat 267.175 kb on + strandat 267.175 kb on + strandat 267.176 kb on - strandat 267.176 kb on - strandat 267.176 kb on - strandat 267.176 kb on - strandat 267.217 kb on + strandat 267.217 kb on + strandat 267.217 kb on + strandat 267.217 kb on + strandat 267.217 kb on + strandat 267.217 kb on + strandat 267.218 kb on - strandat 267.220 kb on + strandat 267.221 kb on - strandat 267.221 kb on - strandat 267.221 kb on - strandat 267.235 kb on + strandat 267.235 kb on + strandat 267.235 kb on + strandat 267.236 kb on - strandat 267.289 kb on + strand, within A4249_RS01440at 267.289 kb on + strand, within A4249_RS01440at 267.289 kb on + strand, within A4249_RS01440at 267.289 kb on + strand, within A4249_RS01440at 267.289 kb on + strand, within A4249_RS01440at 267.290 kb on - strand, within A4249_RS01440at 267.290 kb on - strand, within A4249_RS01440at 267.290 kb on - strand, within A4249_RS01440at 267.373 kb on + strand, within A4249_RS01440at 267.374 kb on - strand, within A4249_RS01440at 267.374 kb on - strand, within A4249_RS01440at 267.374 kb on - strand, within A4249_RS01440at 267.374 kb on - strand, within A4249_RS01440at 267.376 kb on + strand, within A4249_RS01440at 267.377 kb on - strand, within A4249_RS01440at 267.377 kb on - strand, within A4249_RS01440at 267.377 kb on - strand, within A4249_RS01440at 267.424 kb on + strand, within A4249_RS01440at 267.424 kb on + strand, within A4249_RS01440at 267.424 kb on + strand, within A4249_RS01440at 267.424 kb on + strand, within A4249_RS01440at 267.424 kb on + strand, within A4249_RS01440at 267.424 kb on + strand, within A4249_RS01440at 267.424 kb on + strand, within A4249_RS01440at 267.425 kb on - strand, within A4249_RS01440at 267.425 kb on - strand, within A4249_RS01440at 267.425 kb on - strand, within A4249_RS01440at 267.425 kb on - strand, within A4249_RS01440at 267.425 kb on - strand, within A4249_RS01440at 267.425 kb on - strand, within A4249_RS01440at 267.425 kb on - strand, within A4249_RS01440at 267.425 kb on - strand, within A4249_RS01440at 267.733 kb on + strand, within A4249_RS01440at 267.733 kb on + strand, within A4249_RS01440at 267.733 kb on + strand, within A4249_RS01440at 267.733 kb on + strand, within A4249_RS01440at 267.733 kb on + strand, within A4249_RS01440at 267.734 kb on - strand, within A4249_RS01440at 267.734 kb on - strand, within A4249_RS01440at 267.734 kb on - strand, within A4249_RS01440at 267.734 kb on - strand, within A4249_RS01440at 267.745 kb on + strand, within A4249_RS01440at 267.745 kb on + strand, within A4249_RS01440at 267.745 kb on + strand, within A4249_RS01440at 267.745 kb on + strand, within A4249_RS01440at 267.745 kb on + strand, within A4249_RS01440at 267.746 kb on - strand, within A4249_RS01440at 267.746 kb on - strand, within A4249_RS01440at 267.747 kb on + strand, within A4249_RS01440at 267.747 kb on + strand, within A4249_RS01440at 267.747 kb on + strand, within A4249_RS01440at 267.747 kb on + strand, within A4249_RS01440at 267.747 kb on + strand, within A4249_RS01440at 267.747 kb on + strand, within A4249_RS01440at 267.748 kb on - strand, within A4249_RS01440at 267.748 kb on - strand, within A4249_RS01440

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanine 0.6617 mM (C)
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265,209 + A4249_RS01420 0.24 +0.3
265,255 - A4249_RS01420 0.31 +0.4
265,276 + A4249_RS01420 0.34 -0.8
265,276 + A4249_RS01420 0.34 -0.5
265,277 - A4249_RS01420 0.34 -0.1
265,277 - A4249_RS01420 0.34 -0.7
265,277 - A4249_RS01420 0.34 -0.1
265,277 - A4249_RS01420 0.34 -0.2
265,277 - A4249_RS01420 0.34 -0.2
265,308 + A4249_RS01420 0.39 +0.8
265,309 - A4249_RS01420 0.39 -0.5
265,309 - A4249_RS01420 0.39 +0.0
265,309 - A4249_RS01420 0.39 +0.3
265,309 - A4249_RS01420 0.39 +0.2
265,309 - A4249_RS01420 0.39 -0.2
265,315 - A4249_RS01420 0.40 +0.0
265,365 + A4249_RS01420 0.47 +1.2
265,365 + A4249_RS01420 0.47 -1.2
265,366 - A4249_RS01420 0.48 +1.0
265,366 - A4249_RS01420 0.48 +0.3
265,366 - A4249_RS01420 0.48 -0.0
265,366 - A4249_RS01420 0.48 -0.3
265,374 + A4249_RS01420 0.49 +0.2
265,374 + A4249_RS01420 0.49 -0.9
265,375 - A4249_RS01420 0.49 -0.3
265,375 - A4249_RS01420 0.49 +0.2
265,608 + A4249_RS01420 0.84 -0.1
265,609 - A4249_RS01420 0.85 +0.4
265,609 - A4249_RS01420 0.85 +1.8
265,676 + +0.5
265,677 - +0.7
265,677 - -0.6
265,730 + -0.5
265,730 + +0.6
265,730 + -0.7
265,730 + -0.6
265,730 + -0.5
265,731 - -0.1
265,731 - +0.4
265,731 - +0.5
265,731 - -0.1
265,731 - -0.8
265,731 - +0.8
265,814 + A4249_RS01425 0.21 -0.8
265,814 + A4249_RS01425 0.21 +0.3
265,814 + A4249_RS01425 0.21 -0.0
265,814 + A4249_RS01425 0.21 +0.4
265,814 + A4249_RS01425 0.21 -0.1
265,815 - A4249_RS01425 0.21 -0.7
265,815 - A4249_RS01425 0.21 +0.1
265,815 - A4249_RS01425 0.21 +0.9
265,815 - A4249_RS01425 0.21 -0.2
265,883 + A4249_RS01425 0.35 +0.4
265,883 + A4249_RS01425 0.35 -1.0
265,883 + A4249_RS01425 0.35 -0.0
265,883 + A4249_RS01425 0.35 +0.2
265,883 + A4249_RS01425 0.35 +0.1
265,884 - A4249_RS01425 0.35 +0.4
265,884 - A4249_RS01425 0.35 +0.1
265,884 - A4249_RS01425 0.35 +0.5
265,884 - A4249_RS01425 0.35 -0.7
265,884 - A4249_RS01425 0.35 -0.6
265,904 + A4249_RS01425 0.39 -0.6
265,905 - A4249_RS01425 0.39 +0.2
266,226 + -1.7
266,226 + -0.1
266,227 - +0.7
266,227 - +0.5
266,227 - -0.5
266,332 + A4249_RS01430 0.18 +0.4
266,332 + A4249_RS01430 0.18 -0.7
266,333 - A4249_RS01430 0.18 -0.2
266,333 - A4249_RS01430 0.18 +0.2
266,333 - A4249_RS01430 0.18 -0.4
266,337 + A4249_RS01430 0.18 +0.1
266,337 + A4249_RS01430 0.18 -0.9
266,337 + A4249_RS01430 0.18 -0.6
266,337 + A4249_RS01430 0.18 -0.5
266,337 + A4249_RS01430 0.18 -0.1
266,337 + A4249_RS01430 0.18 +0.7
266,337 + A4249_RS01430 0.18 -0.7
266,337 + A4249_RS01430 0.18 -0.3
266,337 + A4249_RS01430 0.18 +0.1
266,337 + A4249_RS01430 0.18 +0.0
266,338 - A4249_RS01430 0.19 +0.5
266,338 - A4249_RS01430 0.19 -0.8
266,338 - A4249_RS01430 0.19 -0.8
266,338 - A4249_RS01430 0.19 -1.2
266,338 - A4249_RS01430 0.19 -0.7
266,338 - A4249_RS01430 0.19 -1.2
266,338 - A4249_RS01430 0.19 +0.4
266,338 - A4249_RS01430 0.19 +0.7
266,338 - A4249_RS01430 0.19 +1.1
266,338 - A4249_RS01430 0.19 -0.3
266,540 - A4249_RS01430 0.48 -0.5
266,540 - A4249_RS01430 0.48 +0.1
266,540 - A4249_RS01430 0.48 +0.1
266,540 - A4249_RS01430 0.48 +1.4
266,540 - A4249_RS01430 0.48 +0.3
266,540 - A4249_RS01430 0.48 +0.2
267,175 + -2.4
267,175 + -0.7
267,175 + +0.2
267,175 + +0.2
267,175 + +0.1
267,175 + -0.5
267,176 - +0.4
267,176 - +0.2
267,176 - +0.8
267,176 - -0.0
267,217 + +0.1
267,217 + +0.4
267,217 + -0.7
267,217 + +0.1
267,217 + +0.7
267,217 + -0.6
267,218 - +0.1
267,220 + +0.7
267,221 - +0.4
267,221 - -1.1
267,221 - -0.7
267,235 + +0.1
267,235 + -0.4
267,235 + +0.4
267,236 - -0.1
267,289 + A4249_RS01440 0.13 +0.2
267,289 + A4249_RS01440 0.13 -0.2
267,289 + A4249_RS01440 0.13 -1.0
267,289 + A4249_RS01440 0.13 +0.9
267,289 + A4249_RS01440 0.13 +0.4
267,290 - A4249_RS01440 0.13 -1.0
267,290 - A4249_RS01440 0.13 +0.6
267,290 - A4249_RS01440 0.13 +0.4
267,373 + A4249_RS01440 0.21 -0.1
267,374 - A4249_RS01440 0.21 -0.7
267,374 - A4249_RS01440 0.21 -0.4
267,374 - A4249_RS01440 0.21 -0.1
267,374 - A4249_RS01440 0.21 +0.8
267,376 + A4249_RS01440 0.21 -0.1
267,377 - A4249_RS01440 0.21 -0.2
267,377 - A4249_RS01440 0.21 +0.1
267,377 - A4249_RS01440 0.21 +0.1
267,424 + A4249_RS01440 0.26 -0.0
267,424 + A4249_RS01440 0.26 -0.3
267,424 + A4249_RS01440 0.26 -0.7
267,424 + A4249_RS01440 0.26 +0.8
267,424 + A4249_RS01440 0.26 -0.1
267,424 + A4249_RS01440 0.26 +0.1
267,424 + A4249_RS01440 0.26 -0.4
267,425 - A4249_RS01440 0.26 +0.5
267,425 - A4249_RS01440 0.26 -0.6
267,425 - A4249_RS01440 0.26 -0.2
267,425 - A4249_RS01440 0.26 +0.1
267,425 - A4249_RS01440 0.26 +0.3
267,425 - A4249_RS01440 0.26 -0.3
267,425 - A4249_RS01440 0.26 -0.4
267,425 - A4249_RS01440 0.26 +0.2
267,733 + A4249_RS01440 0.55 -1.1
267,733 + A4249_RS01440 0.55 +0.5
267,733 + A4249_RS01440 0.55 +0.9
267,733 + A4249_RS01440 0.55 +0.8
267,733 + A4249_RS01440 0.55 -0.5
267,734 - A4249_RS01440 0.55 -0.6
267,734 - A4249_RS01440 0.55 -0.0
267,734 - A4249_RS01440 0.55 +0.1
267,734 - A4249_RS01440 0.55 +0.5
267,745 + A4249_RS01440 0.56 -0.1
267,745 + A4249_RS01440 0.56 +0.4
267,745 + A4249_RS01440 0.56 +0.2
267,745 + A4249_RS01440 0.56 +0.8
267,745 + A4249_RS01440 0.56 +1.0
267,746 - A4249_RS01440 0.57 -0.3
267,746 - A4249_RS01440 0.57 -1.1
267,747 + A4249_RS01440 0.57 -0.2
267,747 + A4249_RS01440 0.57 +0.1
267,747 + A4249_RS01440 0.57 +0.1
267,747 + A4249_RS01440 0.57 +0.1
267,747 + A4249_RS01440 0.57 -0.0
267,747 + A4249_RS01440 0.57 -1.0
267,748 - A4249_RS01440 0.57 -0.8
267,748 - A4249_RS01440 0.57 -0.0

Or see this region's nucleotide sequence