Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS00425

Experiment: Guanine 0.6617 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS00420 and A4249_RS00425 are separated by 61 nucleotidesA4249_RS00425 and A4249_RS00430 are separated by 6 nucleotidesA4249_RS00430 and A4249_RS00435 are separated by 87 nucleotides A4249_RS00420: A4249_RS00420 - S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase, at 71,151 to 72,257 _RS00420 A4249_RS00425: A4249_RS00425 - VOC family protein, at 72,319 to 72,702 _RS00425 A4249_RS00430: A4249_RS00430 - glutathione S-transferase family protein, at 72,709 to 73,395 _RS00430 A4249_RS00435: A4249_RS00435 - S-formylglutathione hydrolase, at 73,483 to 74,322 _RS00435 Position (kb) 72 73Strain fitness (log2 ratio) -2 -1 0 1 2at 71.330 kb on - strand, within A4249_RS00420at 71.412 kb on + strand, within A4249_RS00420at 71.413 kb on - strand, within A4249_RS00420at 71.413 kb on - strand, within A4249_RS00420at 71.435 kb on + strand, within A4249_RS00420at 71.435 kb on + strand, within A4249_RS00420at 71.436 kb on - strand, within A4249_RS00420at 71.436 kb on - strand, within A4249_RS00420at 71.436 kb on - strand, within A4249_RS00420at 71.436 kb on - strand, within A4249_RS00420at 71.436 kb on - strand, within A4249_RS00420at 71.436 kb on - strand, within A4249_RS00420at 71.436 kb on - strand, within A4249_RS00420at 71.436 kb on - strand, within A4249_RS00420at 71.529 kb on + strand, within A4249_RS00420at 71.529 kb on + strand, within A4249_RS00420at 71.529 kb on + strand, within A4249_RS00420at 71.529 kb on + strand, within A4249_RS00420at 71.529 kb on + strand, within A4249_RS00420at 71.553 kb on + strand, within A4249_RS00420at 71.553 kb on + strand, within A4249_RS00420at 71.553 kb on + strand, within A4249_RS00420at 71.553 kb on + strand, within A4249_RS00420at 71.553 kb on + strand, within A4249_RS00420at 71.553 kb on + strand, within A4249_RS00420at 71.553 kb on + strand, within A4249_RS00420at 71.553 kb on + strand, within A4249_RS00420at 71.553 kb on + strand, within A4249_RS00420at 71.553 kb on + strand, within A4249_RS00420at 71.553 kb on + strand, within A4249_RS00420at 71.553 kb on + strand, within A4249_RS00420at 71.553 kb on + strand, within A4249_RS00420at 71.553 kb on + strand, within A4249_RS00420at 71.553 kb on + strand, within A4249_RS00420at 71.553 kb on + strand, within A4249_RS00420at 71.553 kb on + strand, within A4249_RS00420at 71.554 kb on - strand, within A4249_RS00420at 71.554 kb on - strand, within A4249_RS00420at 71.554 kb on - strand, within A4249_RS00420at 71.554 kb on - strand, within A4249_RS00420at 71.554 kb on - strand, within A4249_RS00420at 71.554 kb on - strand, within A4249_RS00420at 71.554 kb on - strand, within A4249_RS00420at 71.554 kb on - strand, within A4249_RS00420at 71.554 kb on - strand, within A4249_RS00420at 71.554 kb on - strand, within A4249_RS00420at 71.554 kb on - strand, within A4249_RS00420at 71.554 kb on - strand, within A4249_RS00420at 71.555 kb on + strand, within A4249_RS00420at 71.555 kb on + strand, within A4249_RS00420at 71.555 kb on + strand, within A4249_RS00420at 71.555 kb on + strand, within A4249_RS00420at 71.555 kb on + strand, within A4249_RS00420at 71.555 kb on + strand, within A4249_RS00420at 71.555 kb on + strand, within A4249_RS00420at 71.556 kb on - strand, within A4249_RS00420at 71.556 kb on - strand, within A4249_RS00420at 71.556 kb on - strand, within A4249_RS00420at 71.646 kb on + strand, within A4249_RS00420at 71.646 kb on + strand, within A4249_RS00420at 71.646 kb on + strand, within A4249_RS00420at 71.646 kb on + strand, within A4249_RS00420at 71.646 kb on + strand, within A4249_RS00420at 71.647 kb on - strand, within A4249_RS00420at 71.647 kb on - strand, within A4249_RS00420at 71.647 kb on - strand, within A4249_RS00420at 71.922 kb on + strand, within A4249_RS00420at 71.922 kb on + strand, within A4249_RS00420at 71.922 kb on + strand, within A4249_RS00420at 71.922 kb on + strand, within A4249_RS00420at 71.922 kb on + strand, within A4249_RS00420at 71.923 kb on - strand, within A4249_RS00420at 71.923 kb on - strand, within A4249_RS00420at 71.923 kb on - strand, within A4249_RS00420at 71.923 kb on - strand, within A4249_RS00420at 72.135 kb on + strand, within A4249_RS00420at 72.135 kb on + strand, within A4249_RS00420at 72.135 kb on + strand, within A4249_RS00420at 72.135 kb on + strand, within A4249_RS00420at 72.135 kb on + strand, within A4249_RS00420at 72.136 kb on - strand, within A4249_RS00420at 72.136 kb on - strand, within A4249_RS00420at 72.136 kb on - strand, within A4249_RS00420at 72.136 kb on - strand, within A4249_RS00420at 72.374 kb on - strand, within A4249_RS00425at 72.374 kb on - strand, within A4249_RS00425at 72.374 kb on - strand, within A4249_RS00425at 72.649 kb on + strand, within A4249_RS00425at 72.649 kb on + strand, within A4249_RS00425at 72.650 kb on - strand, within A4249_RS00425at 72.650 kb on - strand, within A4249_RS00425at 72.650 kb on - strand, within A4249_RS00425at 72.797 kb on + strand, within A4249_RS00430at 72.827 kb on + strand, within A4249_RS00430at 72.828 kb on - strand, within A4249_RS00430at 72.828 kb on - strand, within A4249_RS00430at 72.845 kb on + strand, within A4249_RS00430at 72.846 kb on - strand, within A4249_RS00430at 72.846 kb on - strand, within A4249_RS00430at 72.853 kb on + strand, within A4249_RS00430at 72.853 kb on + strand, within A4249_RS00430at 72.853 kb on + strand, within A4249_RS00430at 72.853 kb on + strand, within A4249_RS00430at 72.854 kb on - strand, within A4249_RS00430at 72.854 kb on - strand, within A4249_RS00430at 72.854 kb on - strand, within A4249_RS00430at 72.854 kb on - strand, within A4249_RS00430at 73.095 kb on - strand, within A4249_RS00430at 73.095 kb on - strand, within A4249_RS00430at 73.095 kb on - strand, within A4249_RS00430at 73.095 kb on - strand, within A4249_RS00430at 73.095 kb on - strand, within A4249_RS00430at 73.295 kb on + strand, within A4249_RS00430at 73.295 kb on + strand, within A4249_RS00430at 73.295 kb on + strand, within A4249_RS00430at 73.296 kb on - strand, within A4249_RS00430at 73.296 kb on - strand, within A4249_RS00430at 73.296 kb on - strand, within A4249_RS00430at 73.430 kb on + strandat 73.430 kb on + strandat 73.430 kb on + strandat 73.430 kb on + strandat 73.430 kb on + strandat 73.431 kb on - strandat 73.431 kb on - strandat 73.472 kb on - strandat 73.534 kb on + strandat 73.534 kb on + strandat 73.534 kb on + strandat 73.535 kb on - strandat 73.535 kb on - strandat 73.535 kb on - strandat 73.653 kb on + strand, within A4249_RS00435at 73.678 kb on + strand, within A4249_RS00435at 73.678 kb on + strand, within A4249_RS00435at 73.678 kb on + strand, within A4249_RS00435at 73.679 kb on - strand, within A4249_RS00435at 73.679 kb on - strand, within A4249_RS00435

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanine 0.6617 mM (C)
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71,330 - A4249_RS00420 0.16 -0.3
71,412 + A4249_RS00420 0.24 -1.0
71,413 - A4249_RS00420 0.24 -0.4
71,413 - A4249_RS00420 0.24 -0.7
71,435 + A4249_RS00420 0.26 +2.0
71,435 + A4249_RS00420 0.26 -0.2
71,436 - A4249_RS00420 0.26 -0.1
71,436 - A4249_RS00420 0.26 +0.7
71,436 - A4249_RS00420 0.26 +0.7
71,436 - A4249_RS00420 0.26 +1.6
71,436 - A4249_RS00420 0.26 +0.5
71,436 - A4249_RS00420 0.26 +0.7
71,436 - A4249_RS00420 0.26 +0.1
71,436 - A4249_RS00420 0.26 +0.6
71,529 + A4249_RS00420 0.34 +0.0
71,529 + A4249_RS00420 0.34 -0.5
71,529 + A4249_RS00420 0.34 -0.9
71,529 + A4249_RS00420 0.34 -0.1
71,529 + A4249_RS00420 0.34 -0.0
71,553 + A4249_RS00420 0.36 -0.1
71,553 + A4249_RS00420 0.36 +0.9
71,553 + A4249_RS00420 0.36 +0.6
71,553 + A4249_RS00420 0.36 -0.5
71,553 + A4249_RS00420 0.36 -1.4
71,553 + A4249_RS00420 0.36 -0.2
71,553 + A4249_RS00420 0.36 +0.5
71,553 + A4249_RS00420 0.36 -0.1
71,553 + A4249_RS00420 0.36 +0.0
71,553 + A4249_RS00420 0.36 -0.4
71,553 + A4249_RS00420 0.36 -0.7
71,553 + A4249_RS00420 0.36 +0.2
71,553 + A4249_RS00420 0.36 +0.7
71,553 + A4249_RS00420 0.36 +0.0
71,553 + A4249_RS00420 0.36 -0.3
71,553 + A4249_RS00420 0.36 -0.4
71,553 + A4249_RS00420 0.36 +0.7
71,554 - A4249_RS00420 0.36 -0.1
71,554 - A4249_RS00420 0.36 -0.2
71,554 - A4249_RS00420 0.36 +0.0
71,554 - A4249_RS00420 0.36 +1.5
71,554 - A4249_RS00420 0.36 +0.0
71,554 - A4249_RS00420 0.36 -0.2
71,554 - A4249_RS00420 0.36 -0.7
71,554 - A4249_RS00420 0.36 -0.3
71,554 - A4249_RS00420 0.36 -0.2
71,554 - A4249_RS00420 0.36 +0.0
71,554 - A4249_RS00420 0.36 +0.0
71,554 - A4249_RS00420 0.36 +0.1
71,555 + A4249_RS00420 0.36 +0.8
71,555 + A4249_RS00420 0.36 +0.3
71,555 + A4249_RS00420 0.36 +0.3
71,555 + A4249_RS00420 0.36 +0.8
71,555 + A4249_RS00420 0.36 -0.1
71,555 + A4249_RS00420 0.36 +0.6
71,555 + A4249_RS00420 0.36 -1.8
71,556 - A4249_RS00420 0.37 +0.6
71,556 - A4249_RS00420 0.37 +0.6
71,556 - A4249_RS00420 0.37 -0.9
71,646 + A4249_RS00420 0.45 +0.7
71,646 + A4249_RS00420 0.45 +0.1
71,646 + A4249_RS00420 0.45 -0.2
71,646 + A4249_RS00420 0.45 +0.2
71,646 + A4249_RS00420 0.45 -2.1
71,647 - A4249_RS00420 0.45 -1.2
71,647 - A4249_RS00420 0.45 +1.5
71,647 - A4249_RS00420 0.45 +0.1
71,922 + A4249_RS00420 0.70 -0.1
71,922 + A4249_RS00420 0.70 +0.2
71,922 + A4249_RS00420 0.70 -0.4
71,922 + A4249_RS00420 0.70 +0.8
71,922 + A4249_RS00420 0.70 -0.0
71,923 - A4249_RS00420 0.70 +1.0
71,923 - A4249_RS00420 0.70 +0.7
71,923 - A4249_RS00420 0.70 -0.6
71,923 - A4249_RS00420 0.70 -0.2
72,135 + A4249_RS00420 0.89 +0.3
72,135 + A4249_RS00420 0.89 +0.6
72,135 + A4249_RS00420 0.89 +0.4
72,135 + A4249_RS00420 0.89 -0.2
72,135 + A4249_RS00420 0.89 +1.0
72,136 - A4249_RS00420 0.89 +1.1
72,136 - A4249_RS00420 0.89 +0.0
72,136 - A4249_RS00420 0.89 +0.3
72,136 - A4249_RS00420 0.89 +0.3
72,374 - A4249_RS00425 0.14 +0.2
72,374 - A4249_RS00425 0.14 -0.8
72,374 - A4249_RS00425 0.14 -0.8
72,649 + A4249_RS00425 0.86 -0.9
72,649 + A4249_RS00425 0.86 -0.1
72,650 - A4249_RS00425 0.86 -1.1
72,650 - A4249_RS00425 0.86 -0.7
72,650 - A4249_RS00425 0.86 -0.1
72,797 + A4249_RS00430 0.13 -0.1
72,827 + A4249_RS00430 0.17 -0.4
72,828 - A4249_RS00430 0.17 -0.8
72,828 - A4249_RS00430 0.17 +1.3
72,845 + A4249_RS00430 0.20 +0.6
72,846 - A4249_RS00430 0.20 -0.7
72,846 - A4249_RS00430 0.20 -1.1
72,853 + A4249_RS00430 0.21 +0.5
72,853 + A4249_RS00430 0.21 -0.7
72,853 + A4249_RS00430 0.21 -0.4
72,853 + A4249_RS00430 0.21 +0.2
72,854 - A4249_RS00430 0.21 +0.9
72,854 - A4249_RS00430 0.21 +0.2
72,854 - A4249_RS00430 0.21 -0.5
72,854 - A4249_RS00430 0.21 +0.3
73,095 - A4249_RS00430 0.56 -0.2
73,095 - A4249_RS00430 0.56 -0.8
73,095 - A4249_RS00430 0.56 +0.2
73,095 - A4249_RS00430 0.56 +0.3
73,095 - A4249_RS00430 0.56 +0.0
73,295 + A4249_RS00430 0.85 -0.9
73,295 + A4249_RS00430 0.85 -0.0
73,295 + A4249_RS00430 0.85 +1.2
73,296 - A4249_RS00430 0.85 -0.3
73,296 - A4249_RS00430 0.85 -1.0
73,296 - A4249_RS00430 0.85 -0.8
73,430 + -0.6
73,430 + -0.6
73,430 + +0.4
73,430 + -1.0
73,430 + -2.1
73,431 - +0.5
73,431 - +0.6
73,472 - +0.7
73,534 + +0.3
73,534 + -0.3
73,534 + +1.1
73,535 - +0.3
73,535 - +0.0
73,535 - -0.5
73,653 + A4249_RS00435 0.20 -1.2
73,678 + A4249_RS00435 0.23 -0.8
73,678 + A4249_RS00435 0.23 -0.1
73,678 + A4249_RS00435 0.23 +0.2
73,679 - A4249_RS00435 0.23 -0.1
73,679 - A4249_RS00435 0.23 -0.4

Or see this region's nucleotide sequence