Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tra5 and NIAGMN_28675 are separated by 358 nucleotides NIAGMN_28675 and parE are separated by 94 nucleotides parE and putA1 overlap by 1 nucleotides
NIAGMN_28670: tra5 - IS3 family transposase, at 43,145 to 43,624
tra5
NIAGMN_28675: NIAGMN_28675 - hypothetical protein, at 43,983 to 44,189
_28675
NIAGMN_28680: parE - plasmid stabilization protein, at 44,284 to 44,559
parE
NIAGMN_28685: putA1 - CopG family transcriptional regulator, at 44,559 to 44,837
putA1
Position (kb) 43
44
45 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 43.031 kb on - strand at 43.031 kb on - strand at 43.489 kb on + strand, within tra5 at 43.489 kb on + strand, within tra5 at 43.489 kb on + strand, within tra5 at 43.810 kb on - strand at 43.822 kb on - strand at 43.822 kb on - strand at 43.822 kb on - strand at 43.822 kb on - strand at 43.822 kb on - strand at 43.863 kb on + strand at 43.863 kb on + strand at 43.863 kb on + strand at 43.864 kb on - strand at 43.864 kb on - strand at 43.864 kb on - strand at 43.882 kb on + strand at 43.883 kb on - strand at 43.893 kb on - strand at 43.935 kb on - strand at 44.000 kb on - strand at 44.000 kb on - strand at 44.009 kb on - strand, within NIAGMN_28675 at 44.009 kb on - strand, within NIAGMN_28675 at 44.009 kb on - strand, within NIAGMN_28675 at 44.025 kb on + strand, within NIAGMN_28675 at 44.026 kb on - strand, within NIAGMN_28675 at 44.026 kb on - strand, within NIAGMN_28675 at 44.026 kb on - strand, within NIAGMN_28675 at 44.026 kb on - strand, within NIAGMN_28675 at 44.026 kb on - strand, within NIAGMN_28675 at 44.026 kb on - strand, within NIAGMN_28675 at 44.028 kb on - strand, within NIAGMN_28675 at 44.028 kb on - strand, within NIAGMN_28675 at 44.031 kb on + strand, within NIAGMN_28675 at 44.031 kb on + strand, within NIAGMN_28675 at 44.032 kb on - strand, within NIAGMN_28675 at 44.032 kb on - strand, within NIAGMN_28675 at 44.032 kb on - strand, within NIAGMN_28675 at 44.032 kb on - strand, within NIAGMN_28675 at 44.032 kb on - strand, within NIAGMN_28675 at 44.032 kb on - strand, within NIAGMN_28675 at 44.032 kb on - strand, within NIAGMN_28675 at 44.033 kb on + strand, within NIAGMN_28675 at 44.033 kb on + strand, within NIAGMN_28675 at 44.034 kb on - strand, within NIAGMN_28675 at 44.034 kb on - strand, within NIAGMN_28675 at 44.038 kb on - strand, within NIAGMN_28675 at 44.111 kb on + strand, within NIAGMN_28675 at 44.112 kb on - strand, within NIAGMN_28675 at 44.112 kb on - strand, within NIAGMN_28675 at 44.121 kb on - strand, within NIAGMN_28675 at 44.124 kb on - strand, within NIAGMN_28675 at 44.124 kb on - strand, within NIAGMN_28675 at 44.140 kb on + strand, within NIAGMN_28675 at 44.141 kb on - strand, within NIAGMN_28675 at 44.141 kb on - strand, within NIAGMN_28675 at 44.151 kb on - strand, within NIAGMN_28675 at 44.192 kb on + strand at 44.192 kb on + strand at 44.228 kb on - strand at 44.228 kb on - strand at 44.230 kb on + strand at 44.231 kb on - strand at 44.248 kb on - strand at 44.258 kb on + strand at 44.259 kb on - strand at 44.259 kb on - strand at 44.259 kb on - strand at 44.259 kb on - strand at 44.263 kb on + strand at 44.263 kb on + strand at 44.264 kb on - strand at 44.264 kb on - strand at 44.285 kb on + strand at 44.286 kb on - strand at 44.317 kb on + strand, within parE at 44.318 kb on - strand, within parE at 44.318 kb on - strand, within parE at 44.318 kb on - strand, within parE at 44.318 kb on - strand, within parE at 44.321 kb on + strand, within parE at 44.321 kb on + strand, within parE at 44.321 kb on + strand, within parE at 44.321 kb on + strand, within parE at 44.322 kb on - strand, within parE at 44.322 kb on - strand, within parE at 44.325 kb on + strand, within parE at 44.325 kb on + strand, within parE at 44.325 kb on + strand, within parE at 44.326 kb on - strand, within parE at 44.337 kb on + strand, within parE at 44.338 kb on - strand, within parE at 44.338 kb on - strand, within parE at 44.404 kb on + strand, within parE at 44.405 kb on - strand, within parE at 44.418 kb on + strand, within parE at 44.419 kb on - strand, within parE at 44.464 kb on + strand, within parE at 44.464 kb on + strand, within parE at 44.465 kb on - strand, within parE at 44.488 kb on - strand, within parE at 44.511 kb on - strand, within parE at 44.513 kb on - strand, within parE at 44.513 kb on - strand, within parE at 44.513 kb on - strand, within parE at 44.538 kb on + strand at 44.539 kb on - strand at 44.869 kb on - strand at 44.869 kb on - strand at 44.881 kb on + strand at 44.905 kb on + strand at 44.906 kb on - strand at 44.906 kb on - strand at 44.924 kb on + strand at 44.924 kb on + strand at 44.924 kb on + strand at 44.924 kb on + strand at 44.924 kb on + strand at 44.924 kb on + strand at 44.924 kb on + strand at 44.925 kb on - strand at 44.925 kb on - strand at 44.925 kb on - strand at 44.925 kb on - strand at 44.925 kb on - strand at 44.925 kb on - strand at 44.934 kb on + strand at 44.934 kb on + strand at 44.934 kb on + strand at 44.943 kb on + strand at 44.949 kb on + strand at 44.949 kb on + strand at 44.949 kb on + strand at 44.950 kb on - strand at 44.950 kb on - strand at 44.950 kb on - strand at 44.950 kb on - strand at 44.960 kb on + strand at 44.960 kb on + strand at 44.961 kb on - strand at 44.982 kb on - strand at 45.063 kb on + strand at 45.063 kb on + strand at 45.064 kb on - strand at 45.115 kb on - strand at 45.115 kb on - strand at 45.115 kb on - strand at 45.146 kb on + strand at 45.146 kb on + strand at 45.157 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 43,031 - -2.3 43,031 - +2.6 43,489 + tra5 NIAGMN_28670 0.72 +0.0 43,489 + tra5 NIAGMN_28670 0.72 -0.6 43,489 + tra5 NIAGMN_28670 0.72 +2.7 43,810 - -1.3 43,822 - +0.1 43,822 - +1.0 43,822 - +0.1 43,822 - +0.7 43,822 - -2.5 43,863 + -0.8 43,863 + -0.7 43,863 + -0.1 43,864 - -1.8 43,864 - -1.8 43,864 - -0.1 43,882 + -0.1 43,883 - +0.9 43,893 - -0.6 43,935 - -0.0 44,000 - -0.2 44,000 - +0.4 44,009 - NIAGMN_28675 0.13 +1.2 44,009 - NIAGMN_28675 0.13 +0.7 44,009 - NIAGMN_28675 0.13 -0.5 44,025 + NIAGMN_28675 0.20 +0.7 44,026 - NIAGMN_28675 0.21 +1.5 44,026 - NIAGMN_28675 0.21 -1.4 44,026 - NIAGMN_28675 0.21 -3.1 44,026 - NIAGMN_28675 0.21 -0.1 44,026 - NIAGMN_28675 0.21 +1.2 44,026 - NIAGMN_28675 0.21 +0.7 44,028 - NIAGMN_28675 0.22 -0.5 44,028 - NIAGMN_28675 0.22 -1.0 44,031 + NIAGMN_28675 0.23 -2.3 44,031 + NIAGMN_28675 0.23 +1.0 44,032 - NIAGMN_28675 0.24 -1.7 44,032 - NIAGMN_28675 0.24 -0.9 44,032 - NIAGMN_28675 0.24 +0.7 44,032 - NIAGMN_28675 0.24 +0.2 44,032 - NIAGMN_28675 0.24 -1.0 44,032 - NIAGMN_28675 0.24 +4.3 44,032 - NIAGMN_28675 0.24 +2.8 44,033 + NIAGMN_28675 0.24 +2.1 44,033 + NIAGMN_28675 0.24 +1.0 44,034 - NIAGMN_28675 0.25 +1.4 44,034 - NIAGMN_28675 0.25 -0.1 44,038 - NIAGMN_28675 0.27 -1.5 44,111 + NIAGMN_28675 0.62 +2.0 44,112 - NIAGMN_28675 0.62 -0.0 44,112 - NIAGMN_28675 0.62 +0.0 44,121 - NIAGMN_28675 0.67 +0.6 44,124 - NIAGMN_28675 0.68 +0.9 44,124 - NIAGMN_28675 0.68 +0.5 44,140 + NIAGMN_28675 0.76 +2.0 44,141 - NIAGMN_28675 0.76 -1.2 44,141 - NIAGMN_28675 0.76 -1.0 44,151 - NIAGMN_28675 0.81 -1.0 44,192 + -0.5 44,192 + -1.7 44,228 - +0.7 44,228 - +0.2 44,230 + +1.0 44,231 - +0.3 44,248 - +2.0 44,258 + -1.9 44,259 - -0.4 44,259 - +3.2 44,259 - -0.2 44,259 - +1.1 44,263 + -0.8 44,263 + -0.7 44,264 - -0.1 44,264 - -0.5 44,285 + -0.3 44,286 - +1.5 44,317 + parE NIAGMN_28680 0.12 +0.7 44,318 - parE NIAGMN_28680 0.12 -1.1 44,318 - parE NIAGMN_28680 0.12 -1.6 44,318 - parE NIAGMN_28680 0.12 +0.8 44,318 - parE NIAGMN_28680 0.12 -1.1 44,321 + parE NIAGMN_28680 0.13 +0.9 44,321 + parE NIAGMN_28680 0.13 -0.6 44,321 + parE NIAGMN_28680 0.13 -1.9 44,321 + parE NIAGMN_28680 0.13 -0.9 44,322 - parE NIAGMN_28680 0.14 +0.8 44,322 - parE NIAGMN_28680 0.14 +0.3 44,325 + parE NIAGMN_28680 0.15 +2.0 44,325 + parE NIAGMN_28680 0.15 -2.3 44,325 + parE NIAGMN_28680 0.15 -1.0 44,326 - parE NIAGMN_28680 0.15 -2.1 44,337 + parE NIAGMN_28680 0.19 -1.8 44,338 - parE NIAGMN_28680 0.20 -2.2 44,338 - parE NIAGMN_28680 0.20 -0.4 44,404 + parE NIAGMN_28680 0.43 -3.4 44,405 - parE NIAGMN_28680 0.44 -0.0 44,418 + parE NIAGMN_28680 0.49 -1.3 44,419 - parE NIAGMN_28680 0.49 +2.8 44,464 + parE NIAGMN_28680 0.65 -0.7 44,464 + parE NIAGMN_28680 0.65 +0.1 44,465 - parE NIAGMN_28680 0.66 -1.6 44,488 - parE NIAGMN_28680 0.74 +0.1 44,511 - parE NIAGMN_28680 0.82 -0.0 44,513 - parE NIAGMN_28680 0.83 -1.3 44,513 - parE NIAGMN_28680 0.83 -0.2 44,513 - parE NIAGMN_28680 0.83 +0.2 44,538 + -0.9 44,539 - +0.1 44,869 - +2.8 44,869 - -0.8 44,881 + -0.7 44,905 + +0.9 44,906 - +0.3 44,906 - -2.7 44,924 + -2.2 44,924 + +1.5 44,924 + -0.8 44,924 + +1.4 44,924 + +2.7 44,924 + +1.0 44,924 + +1.0 44,925 - -1.7 44,925 - +1.2 44,925 - -1.4 44,925 - +0.3 44,925 - +0.2 44,925 - -2.3 44,934 + +1.8 44,934 + +2.7 44,934 + -1.4 44,943 + +1.0 44,949 + -0.1 44,949 + +0.4 44,949 + -1.8 44,950 - +1.8 44,950 - -0.2 44,950 - +2.5 44,950 - +0.1 44,960 + -0.9 44,960 + +0.2 44,961 - +2.3 44,982 - +1.7 45,063 + -0.8 45,063 + +0.4 45,064 - -0.9 45,115 - +0.8 45,115 - -1.0 45,115 - -0.6 45,146 + +2.5 45,146 + -1.2 45,157 - -1.6
Or see this region's nucleotide sequence