Strain Fitness in Escherichia coli ECRC102 around NIAGMN_28635
Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | L-Arabinose |
---|---|---|---|---|---|
remove | |||||
29,425 | + | opgE | NIAGMN_28630 | 0.48 | -0.7 |
29,425 | + | opgE | NIAGMN_28630 | 0.48 | -0.7 |
29,426 | - | opgE | NIAGMN_28630 | 0.48 | +0.8 |
29,426 | - | opgE | NIAGMN_28630 | 0.48 | -1.0 |
29,426 | - | opgE | NIAGMN_28630 | 0.48 | -1.7 |
29,426 | - | opgE | NIAGMN_28630 | 0.48 | -0.5 |
29,454 | + | opgE | NIAGMN_28630 | 0.50 | +1.1 |
29,455 | - | opgE | NIAGMN_28630 | 0.50 | -1.3 |
29,479 | + | opgE | NIAGMN_28630 | 0.52 | +0.5 |
29,479 | + | opgE | NIAGMN_28630 | 0.52 | -0.1 |
29,488 | + | opgE | NIAGMN_28630 | 0.52 | +0.3 |
29,488 | + | opgE | NIAGMN_28630 | 0.52 | +0.2 |
29,488 | + | opgE | NIAGMN_28630 | 0.52 | -2.3 |
29,489 | - | opgE | NIAGMN_28630 | 0.52 | -0.6 |
29,489 | - | opgE | NIAGMN_28630 | 0.52 | +0.8 |
29,489 | - | opgE | NIAGMN_28630 | 0.52 | +1.0 |
29,507 | - | opgE | NIAGMN_28630 | 0.53 | -1.8 |
29,507 | - | opgE | NIAGMN_28630 | 0.53 | -1.6 |
29,540 | + | opgE | NIAGMN_28630 | 0.55 | +0.6 |
29,540 | + | opgE | NIAGMN_28630 | 0.55 | -0.0 |
29,540 | + | opgE | NIAGMN_28630 | 0.55 | +3.0 |
29,540 | + | opgE | NIAGMN_28630 | 0.55 | +0.2 |
29,541 | - | opgE | NIAGMN_28630 | 0.55 | +0.8 |
29,541 | - | opgE | NIAGMN_28630 | 0.55 | -0.9 |
29,541 | - | opgE | NIAGMN_28630 | 0.55 | -1.2 |
29,541 | - | opgE | NIAGMN_28630 | 0.55 | +0.3 |
29,544 | + | opgE | NIAGMN_28630 | 0.55 | -1.2 |
29,551 | - | opgE | NIAGMN_28630 | 0.56 | -0.7 |
29,551 | - | opgE | NIAGMN_28630 | 0.56 | -1.4 |
29,551 | - | opgE | NIAGMN_28630 | 0.56 | +1.3 |
29,551 | - | opgE | NIAGMN_28630 | 0.56 | -0.5 |
29,552 | + | opgE | NIAGMN_28630 | 0.56 | -0.6 |
29,552 | + | opgE | NIAGMN_28630 | 0.56 | -0.0 |
29,553 | - | opgE | NIAGMN_28630 | 0.56 | +1.7 |
29,706 | + | opgE | NIAGMN_28630 | 0.65 | +1.0 |
29,706 | + | opgE | NIAGMN_28630 | 0.65 | -2.5 |
29,709 | + | opgE | NIAGMN_28630 | 0.65 | -1.3 |
29,709 | + | opgE | NIAGMN_28630 | 0.65 | -1.3 |
29,709 | + | opgE | NIAGMN_28630 | 0.65 | +0.3 |
29,709 | + | opgE | NIAGMN_28630 | 0.65 | -0.2 |
29,710 | - | opgE | NIAGMN_28630 | 0.65 | +0.3 |
29,710 | - | opgE | NIAGMN_28630 | 0.65 | -0.5 |
29,765 | + | opgE | NIAGMN_28630 | 0.68 | -1.2 |
29,770 | + | opgE | NIAGMN_28630 | 0.68 | -1.1 |
29,770 | + | opgE | NIAGMN_28630 | 0.68 | -0.2 |
29,771 | - | opgE | NIAGMN_28630 | 0.68 | -1.3 |
29,771 | - | opgE | NIAGMN_28630 | 0.68 | +1.1 |
29,832 | + | opgE | NIAGMN_28630 | 0.72 | -0.7 |
29,832 | + | opgE | NIAGMN_28630 | 0.72 | -0.4 |
29,832 | + | opgE | NIAGMN_28630 | 0.72 | +1.0 |
29,832 | + | opgE | NIAGMN_28630 | 0.72 | +0.4 |
29,832 | + | opgE | NIAGMN_28630 | 0.72 | -0.2 |
29,832 | + | opgE | NIAGMN_28630 | 0.72 | -1.2 |
29,833 | - | opgE | NIAGMN_28630 | 0.72 | +2.8 |
29,833 | - | opgE | NIAGMN_28630 | 0.72 | -0.5 |
29,833 | - | opgE | NIAGMN_28630 | 0.72 | +3.4 |
29,875 | + | opgE | NIAGMN_28630 | 0.75 | -1.1 |
29,875 | + | opgE | NIAGMN_28630 | 0.75 | -1.7 |
29,875 | + | opgE | NIAGMN_28630 | 0.75 | +1.0 |
29,876 | - | opgE | NIAGMN_28630 | 0.75 | +3.0 |
29,876 | - | opgE | NIAGMN_28630 | 0.75 | -2.2 |
29,876 | - | opgE | NIAGMN_28630 | 0.75 | -1.0 |
29,876 | - | opgE | NIAGMN_28630 | 0.75 | +0.9 |
29,876 | - | opgE | NIAGMN_28630 | 0.75 | -2.2 |
29,876 | - | opgE | NIAGMN_28630 | 0.75 | -1.1 |
29,877 | + | opgE | NIAGMN_28630 | 0.75 | -1.9 |
29,877 | + | opgE | NIAGMN_28630 | 0.75 | +3.5 |
29,877 | + | opgE | NIAGMN_28630 | 0.75 | -0.5 |
29,877 | + | opgE | NIAGMN_28630 | 0.75 | -0.9 |
29,877 | + | opgE | NIAGMN_28630 | 0.75 | +2.6 |
29,878 | - | opgE | NIAGMN_28630 | 0.75 | -0.5 |
29,878 | - | opgE | NIAGMN_28630 | 0.75 | -2.6 |
29,878 | - | opgE | NIAGMN_28630 | 0.75 | -1.5 |
29,879 | + | opgE | NIAGMN_28630 | 0.75 | +2.6 |
29,879 | + | opgE | NIAGMN_28630 | 0.75 | -1.9 |
29,880 | - | opgE | NIAGMN_28630 | 0.75 | +0.5 |
29,880 | - | opgE | NIAGMN_28630 | 0.75 | +1.3 |
29,880 | - | opgE | NIAGMN_28630 | 0.75 | +1.5 |
29,920 | + | opgE | NIAGMN_28630 | 0.77 | -0.7 |
29,920 | + | opgE | NIAGMN_28630 | 0.77 | +0.0 |
29,920 | + | opgE | NIAGMN_28630 | 0.77 | -0.9 |
29,921 | - | opgE | NIAGMN_28630 | 0.77 | +0.6 |
29,922 | + | opgE | NIAGMN_28630 | 0.77 | +3.9 |
29,922 | + | opgE | NIAGMN_28630 | 0.77 | +3.1 |
29,922 | + | opgE | NIAGMN_28630 | 0.77 | -1.2 |
29,922 | + | opgE | NIAGMN_28630 | 0.77 | +0.8 |
29,922 | + | opgE | NIAGMN_28630 | 0.77 | -2.1 |
29,922 | + | opgE | NIAGMN_28630 | 0.77 | +2.1 |
29,922 | + | opgE | NIAGMN_28630 | 0.77 | -0.5 |
29,923 | - | opgE | NIAGMN_28630 | 0.77 | +2.5 |
29,923 | - | opgE | NIAGMN_28630 | 0.77 | +0.1 |
29,924 | + | opgE | NIAGMN_28630 | 0.77 | -0.7 |
29,924 | + | opgE | NIAGMN_28630 | 0.77 | +1.7 |
29,924 | + | opgE | NIAGMN_28630 | 0.77 | -1.6 |
29,925 | - | opgE | NIAGMN_28630 | 0.77 | +2.0 |
29,925 | - | opgE | NIAGMN_28630 | 0.77 | +1.7 |
29,925 | - | opgE | NIAGMN_28630 | 0.77 | +1.0 |
29,935 | + | opgE | NIAGMN_28630 | 0.78 | +3.1 |
29,947 | + | opgE | NIAGMN_28630 | 0.79 | +1.5 |
29,947 | + | opgE | NIAGMN_28630 | 0.79 | -0.5 |
30,040 | - | opgE | NIAGMN_28630 | 0.84 | -1.7 |
30,107 | + | opgE | NIAGMN_28630 | 0.88 | +0.8 |
30,161 | + | -0.6 | |||
30,162 | - | +1.5 | |||
30,283 | + | +1.8 | |||
30,284 | - | +2.3 | |||
30,305 | + | +0.1 | |||
30,305 | + | +0.3 | |||
30,342 | + | -1.0 | |||
30,347 | + | -0.7 | |||
30,466 | - | +2.8 | |||
30,487 | - | +1.9 | |||
30,487 | - | -0.4 | |||
30,487 | - | +0.5 | |||
30,680 | - | rfaB | NIAGMN_28635 | 0.25 | -0.8 |
30,825 | - | rfaB | NIAGMN_28635 | 0.38 | +0.2 |
30,825 | - | rfaB | NIAGMN_28635 | 0.38 | +0.2 |
30,887 | + | rfaB | NIAGMN_28635 | 0.44 | +1.5 |
30,888 | - | rfaB | NIAGMN_28635 | 0.44 | +1.2 |
30,888 | - | rfaB | NIAGMN_28635 | 0.44 | +0.5 |
30,888 | - | rfaB | NIAGMN_28635 | 0.44 | -0.8 |
30,892 | + | rfaB | NIAGMN_28635 | 0.44 | +1.6 |
30,892 | + | rfaB | NIAGMN_28635 | 0.44 | +0.5 |
30,893 | - | rfaB | NIAGMN_28635 | 0.44 | +0.9 |
30,893 | - | rfaB | NIAGMN_28635 | 0.44 | -2.1 |
30,893 | - | rfaB | NIAGMN_28635 | 0.44 | -3.0 |
30,904 | - | rfaB | NIAGMN_28635 | 0.45 | -0.7 |
30,904 | - | rfaB | NIAGMN_28635 | 0.45 | +0.7 |
30,904 | - | rfaB | NIAGMN_28635 | 0.45 | -0.3 |
30,928 | + | rfaB | NIAGMN_28635 | 0.47 | -0.7 |
30,928 | + | rfaB | NIAGMN_28635 | 0.47 | +0.0 |
30,928 | + | rfaB | NIAGMN_28635 | 0.47 | -1.3 |
30,928 | + | rfaB | NIAGMN_28635 | 0.47 | +0.4 |
30,928 | + | rfaB | NIAGMN_28635 | 0.47 | +1.8 |
30,928 | + | rfaB | NIAGMN_28635 | 0.47 | +0.0 |
30,928 | + | rfaB | NIAGMN_28635 | 0.47 | -0.1 |
30,928 | + | rfaB | NIAGMN_28635 | 0.47 | -1.8 |
30,928 | + | rfaB | NIAGMN_28635 | 0.47 | -1.7 |
30,928 | + | rfaB | NIAGMN_28635 | 0.47 | +2.3 |
30,929 | - | rfaB | NIAGMN_28635 | 0.48 | +2.1 |
30,929 | - | rfaB | NIAGMN_28635 | 0.48 | +3.3 |
30,929 | - | rfaB | NIAGMN_28635 | 0.48 | -1.3 |
30,929 | - | rfaB | NIAGMN_28635 | 0.48 | -1.8 |
30,929 | - | rfaB | NIAGMN_28635 | 0.48 | +2.5 |
30,929 | - | rfaB | NIAGMN_28635 | 0.48 | +0.7 |
30,929 | - | rfaB | NIAGMN_28635 | 0.48 | -1.3 |
30,929 | - | rfaB | NIAGMN_28635 | 0.48 | -0.6 |
30,929 | - | rfaB | NIAGMN_28635 | 0.48 | +0.7 |
30,929 | - | rfaB | NIAGMN_28635 | 0.48 | +0.4 |
30,929 | - | rfaB | NIAGMN_28635 | 0.48 | +0.2 |
30,929 | - | rfaB | NIAGMN_28635 | 0.48 | +0.8 |
31,017 | + | rfaB | NIAGMN_28635 | 0.55 | +0.2 |
31,050 | + | rfaB | NIAGMN_28635 | 0.58 | +0.6 |
31,107 | + | rfaB | NIAGMN_28635 | 0.64 | +0.8 |
31,107 | + | rfaB | NIAGMN_28635 | 0.64 | +1.9 |
31,107 | + | rfaB | NIAGMN_28635 | 0.64 | -1.3 |
31,133 | + | rfaB | NIAGMN_28635 | 0.66 | +0.4 |
31,133 | + | rfaB | NIAGMN_28635 | 0.66 | +0.5 |
31,134 | - | rfaB | NIAGMN_28635 | 0.66 | +0.5 |
31,134 | - | rfaB | NIAGMN_28635 | 0.66 | +0.8 |
31,170 | - | rfaB | NIAGMN_28635 | 0.69 | -0.4 |
31,188 | + | rfaB | NIAGMN_28635 | 0.71 | +3.1 |
31,189 | - | rfaB | NIAGMN_28635 | 0.71 | -0.3 |
31,189 | - | rfaB | NIAGMN_28635 | 0.71 | -1.1 |
31,207 | + | rfaB | NIAGMN_28635 | 0.73 | +0.3 |
31,208 | - | rfaB | NIAGMN_28635 | 0.73 | +0.3 |
31,228 | + | rfaB | NIAGMN_28635 | 0.75 | -1.7 |
31,228 | + | rfaB | NIAGMN_28635 | 0.75 | +0.8 |
31,228 | + | rfaB | NIAGMN_28635 | 0.75 | +1.8 |
31,228 | + | rfaB | NIAGMN_28635 | 0.75 | -1.5 |
31,228 | + | rfaB | NIAGMN_28635 | 0.75 | +3.0 |
31,229 | - | rfaB | NIAGMN_28635 | 0.75 | +1.2 |
31,229 | - | rfaB | NIAGMN_28635 | 0.75 | +1.9 |
31,229 | - | rfaB | NIAGMN_28635 | 0.75 | -0.6 |
31,229 | - | rfaB | NIAGMN_28635 | 0.75 | -1.0 |
31,229 | - | rfaB | NIAGMN_28635 | 0.75 | +0.0 |
31,229 | - | rfaB | NIAGMN_28635 | 0.75 | -0.9 |
31,230 | + | rfaB | NIAGMN_28635 | 0.75 | -0.4 |
31,230 | + | rfaB | NIAGMN_28635 | 0.75 | +1.1 |
31,230 | + | rfaB | NIAGMN_28635 | 0.75 | +0.7 |
31,230 | + | rfaB | NIAGMN_28635 | 0.75 | -0.7 |
31,230 | + | rfaB | NIAGMN_28635 | 0.75 | -0.7 |
31,230 | + | rfaB | NIAGMN_28635 | 0.75 | +0.1 |
31,230 | + | rfaB | NIAGMN_28635 | 0.75 | -1.0 |
31,230 | + | rfaB | NIAGMN_28635 | 0.75 | -0.0 |
31,230 | + | rfaB | NIAGMN_28635 | 0.75 | -0.5 |
31,230 | + | rfaB | NIAGMN_28635 | 0.75 | +3.1 |
31,231 | - | rfaB | NIAGMN_28635 | 0.75 | +0.1 |
31,231 | - | rfaB | NIAGMN_28635 | 0.75 | +0.7 |
31,231 | - | rfaB | NIAGMN_28635 | 0.75 | +2.5 |
31,231 | - | rfaB | NIAGMN_28635 | 0.75 | -1.5 |
31,231 | - | rfaB | NIAGMN_28635 | 0.75 | -2.5 |
31,231 | - | rfaB | NIAGMN_28635 | 0.75 | -2.1 |
31,231 | - | rfaB | NIAGMN_28635 | 0.75 | -0.7 |
31,231 | - | rfaB | NIAGMN_28635 | 0.75 | +0.7 |
31,231 | - | rfaB | NIAGMN_28635 | 0.75 | -1.5 |
31,231 | - | rfaB | NIAGMN_28635 | 0.75 | -0.5 |
31,233 | + | rfaB | NIAGMN_28635 | 0.75 | -0.7 |
31,233 | + | rfaB | NIAGMN_28635 | 0.75 | +0.8 |
31,233 | + | rfaB | NIAGMN_28635 | 0.75 | -1.3 |
31,234 | - | rfaB | NIAGMN_28635 | 0.75 | -0.1 |
31,234 | - | rfaB | NIAGMN_28635 | 0.75 | +1.9 |
31,248 | + | rfaB | NIAGMN_28635 | 0.76 | -2.5 |
31,249 | - | rfaB | NIAGMN_28635 | 0.76 | -0.3 |
31,272 | + | rfaB | NIAGMN_28635 | 0.79 | +2.7 |
31,338 | + | rfaB | NIAGMN_28635 | 0.84 | -0.2 |
31,405 | + | +1.4 | |||
31,405 | + | -2.8 | |||
31,405 | + | +2.5 | |||
31,406 | - | -0.2 | |||
31,473 | + | +0.9 | |||
31,511 | - | -0.1 | |||
31,515 | - | +0.2 | |||
31,549 | - | -0.5 | |||
31,571 | + | +1.1 | |||
31,571 | + | +2.3 | |||
31,571 | + | +1.1 | |||
31,572 | - | -1.1 | |||
31,572 | - | +0.7 | |||
31,572 | - | +0.5 | |||
31,573 | + | +2.1 | |||
31,576 | + | +2.0 | |||
31,577 | - | -1.4 | |||
31,577 | - | +0.1 | |||
31,685 | - | NIAGMN_28640 | 0.22 | +0.0 | |
31,687 | - | NIAGMN_28640 | 0.22 | +0.4 | |
31,687 | - | NIAGMN_28640 | 0.22 | +0.4 | |
31,687 | - | NIAGMN_28640 | 0.22 | -0.4 | |
31,687 | - | NIAGMN_28640 | 0.22 | -0.7 | |
31,687 | - | NIAGMN_28640 | 0.22 | -0.9 | |
31,690 | + | NIAGMN_28640 | 0.23 | +2.4 | |
31,690 | + | NIAGMN_28640 | 0.23 | +2.6 | |
31,691 | - | NIAGMN_28640 | 0.23 | +3.1 | |
31,691 | - | NIAGMN_28640 | 0.23 | -1.8 | |
31,722 | - | NIAGMN_28640 | 0.27 | -0.8 | |
31,722 | - | NIAGMN_28640 | 0.27 | +0.9 | |
31,735 | + | NIAGMN_28640 | 0.29 | +1.4 | |
31,736 | - | NIAGMN_28640 | 0.29 | -1.5 | |
31,736 | - | NIAGMN_28640 | 0.29 | +2.6 | |
31,736 | - | NIAGMN_28640 | 0.29 | -1.5 | |
31,736 | - | NIAGMN_28640 | 0.29 | -0.3 | |
31,738 | + | NIAGMN_28640 | 0.29 | +0.1 | |
31,766 | + | NIAGMN_28640 | 0.32 | +1.0 | |
31,767 | - | NIAGMN_28640 | 0.33 | +0.3 | |
31,767 | - | NIAGMN_28640 | 0.33 | -1.7 | |
31,811 | + | NIAGMN_28640 | 0.38 | -0.4 | |
31,812 | - | NIAGMN_28640 | 0.38 | -0.5 | |
31,812 | - | NIAGMN_28640 | 0.38 | +0.4 | |
31,812 | - | NIAGMN_28640 | 0.38 | +3.0 | |
31,848 | + | NIAGMN_28640 | 0.43 | +2.3 | |
31,872 | - | NIAGMN_28640 | 0.46 | -1.9 | |
32,000 | - | NIAGMN_28640 | 0.62 | -0.2 | |
32,018 | + | NIAGMN_28640 | 0.64 | -0.3 | |
32,018 | + | NIAGMN_28640 | 0.64 | +2.6 | |
32,019 | - | NIAGMN_28640 | 0.64 | +2.2 | |
32,019 | - | NIAGMN_28640 | 0.64 | -1.1 | |
32,019 | - | NIAGMN_28640 | 0.64 | -0.6 | |
32,019 | - | NIAGMN_28640 | 0.64 | +2.1 | |
32,019 | - | NIAGMN_28640 | 0.64 | -1.0 | |
32,019 | - | NIAGMN_28640 | 0.64 | +0.2 | |
32,019 | - | NIAGMN_28640 | 0.64 | +1.8 | |
32,022 | + | NIAGMN_28640 | 0.65 | +1.0 | |
32,022 | + | NIAGMN_28640 | 0.65 | +0.2 | |
32,022 | + | NIAGMN_28640 | 0.65 | -1.8 | |
32,023 | - | NIAGMN_28640 | 0.65 | -1.3 | |
32,023 | - | NIAGMN_28640 | 0.65 | -1.2 | |
32,023 | - | NIAGMN_28640 | 0.65 | +1.4 | |
32,060 | + | NIAGMN_28640 | 0.70 | +1.4 | |
32,060 | + | NIAGMN_28640 | 0.70 | -0.4 | |
32,076 | - | NIAGMN_28640 | 0.72 | -0.6 | |
32,077 | + | NIAGMN_28640 | 0.72 | -0.3 | |
32,077 | + | NIAGMN_28640 | 0.72 | -0.3 | |
32,120 | - | NIAGMN_28640 | 0.77 | +1.0 | |
32,200 | - | NIAGMN_28640 | 0.87 | -1.4 | |
32,213 | + | NIAGMN_28640 | 0.89 | +1.1 | |
32,296 | + | +2.1 | |||
32,297 | - | -0.2 | |||
32,297 | - | +1.2 | |||
32,297 | - | -1.2 | |||
32,297 | - | +0.4 | |||
32,297 | - | +0.6 | |||
32,365 | - | -1.0 | |||
32,394 | + | +0.5 | |||
32,395 | - | +0.1 | |||
32,395 | - | -0.5 | |||
32,395 | - | +1.1 | |||
32,398 | + | -0.5 | |||
32,416 | + | +0.9 | |||
32,424 | - | -1.1 | |||
32,498 | - | +1.4 |
Or see this region's nucleotide sequence