Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt eCs1768 and NIAGMN_27485 overlap by 29 nucleotides NIAGMN_27485 and NIAGMN_27490 overlap by 17 nucleotides NIAGMN_27490 and hipB are separated by 76 nucleotides hipB and NIAGMN_27500 are separated by 263 nucleotides
NIAGMN_27480: eCs1768 - DNA-binding protein, at 5,327,653 to 5,328,693
eCs1768
NIAGMN_27485: NIAGMN_27485 - Putative bacterial toxin ydaT, at 5,328,665 to 5,329,216
_27485
NIAGMN_27490: NIAGMN_27490 - transcriptional regulator, at 5,329,200 to 5,329,427
_27490
NIAGMN_27495: hipB - transcriptional regulator, at 5,329,504 to 5,329,911
hipB
NIAGMN_27500: NIAGMN_27500 - hypothetical protein, at 5,330,175 to 5,330,474
_27500
Position (kb) 5328
5329
5330 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5327.889 kb on + strand, within eCs1768 at 5328.382 kb on + strand, within eCs1768 at 5328.405 kb on - strand, within eCs1768 at 5328.676 kb on + strand at 5328.732 kb on + strand, within NIAGMN_27485 at 5328.732 kb on + strand, within NIAGMN_27485 at 5328.732 kb on + strand, within NIAGMN_27485 at 5328.879 kb on + strand, within NIAGMN_27485 at 5328.879 kb on + strand, within NIAGMN_27485 at 5328.880 kb on - strand, within NIAGMN_27485 at 5328.983 kb on - strand, within NIAGMN_27485
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 5,327,889 + eCs1768 NIAGMN_27480 0.23 -0.6 5,328,382 + eCs1768 NIAGMN_27480 0.70 -2.0 5,328,405 - eCs1768 NIAGMN_27480 0.72 +3.4 5,328,676 + +0.6 5,328,732 + NIAGMN_27485 0.12 +0.0 5,328,732 + NIAGMN_27485 0.12 -2.3 5,328,732 + NIAGMN_27485 0.12 -0.5 5,328,879 + NIAGMN_27485 0.39 +0.1 5,328,879 + NIAGMN_27485 0.39 -0.1 5,328,880 - NIAGMN_27485 0.39 +0.0 5,328,983 - NIAGMN_27485 0.58 -2.0
Or see this region's nucleotide sequence