Strain Fitness in Escherichia coli ECRC102 around NIAGMN_27025

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_27015 and yhdJ are separated by 503 nucleotidesyhdJ and NIAGMN_27030 are separated by 150 nucleotidesNIAGMN_27030 and NIAGMN_27035 are separated by 226 nucleotides NIAGMN_27015: NIAGMN_27015 - sialate O-acetylesterase, at 5,257,023 to 5,258,969 _27015 NIAGMN_27025: yhdJ - DNA adenine methylase, at 5,259,473 to 5,260,531 yhdJ NIAGMN_27030: NIAGMN_27030 - TrmB family transcriptional regulator, at 5,260,682 to 5,260,879 _27030 NIAGMN_27035: NIAGMN_27035 - antitermination protein, at 5,261,106 to 5,261,927 _27035 Position (kb) 5259 5260 5261Strain fitness (log2 ratio) -1 0 1 2 3at 5258.953 kb on + strandat 5258.953 kb on + strandat 5258.960 kb on + strandat 5258.994 kb on - strandat 5259.058 kb on - strandat 5259.247 kb on - strandat 5259.247 kb on - strandat 5259.776 kb on - strand, within yhdJat 5259.776 kb on - strand, within yhdJat 5259.778 kb on - strand, within yhdJat 5261.234 kb on + strand, within NIAGMN_27035

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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5,258,953 + +0.8
5,258,953 + -0.1
5,258,960 + -1.4
5,258,994 - -1.6
5,259,058 - -1.5
5,259,247 - +0.0
5,259,247 - +2.5
5,259,776 - yhdJ NIAGMN_27025 0.29 +3.5
5,259,776 - yhdJ NIAGMN_27025 0.29 +0.7
5,259,778 - yhdJ NIAGMN_27025 0.29 -0.5
5,261,234 + NIAGMN_27035 0.16 +0.7

Or see this region's nucleotide sequence