Strain Fitness in Escherichia coli ECRC102 around NIAGMN_26740

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpgpB and ribA are separated by 169 nucleotidesribA and acnA are separated by 63 nucleotides NIAGMN_26735: pgpB - phosphatidylglycerophosphatase B, at 5,205,710 to 5,206,474 pgpB NIAGMN_26740: ribA - GTP cyclohydrolase-2, at 5,206,644 to 5,207,234 ribA NIAGMN_26745: acnA - aconitate hydratase AcnA, at 5,207,298 to 5,209,973 acnA Position (kb) 5206 5207 5208Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5206.309 kb on + strand, within pgpBat 5206.362 kb on - strand, within pgpBat 5206.629 kb on + strandat 5206.629 kb on + strandat 5206.629 kb on + strandat 5207.232 kb on + strandat 5207.232 kb on + strandat 5207.250 kb on + strandat 5207.254 kb on + strandat 5207.299 kb on + strandat 5207.702 kb on + strand, within acnAat 5207.722 kb on + strand, within acnAat 5207.858 kb on - strand, within acnAat 5207.895 kb on + strand, within acnAat 5207.899 kb on + strand, within acnA

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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5,206,309 + pgpB NIAGMN_26735 0.78 +0.1
5,206,362 - pgpB NIAGMN_26735 0.85 +0.4
5,206,629 + +0.5
5,206,629 + -0.1
5,206,629 + +0.6
5,207,232 + +0.1
5,207,232 + -0.8
5,207,250 + +1.9
5,207,254 + -0.1
5,207,299 + -2.2
5,207,702 + acnA NIAGMN_26745 0.15 -0.3
5,207,722 + acnA NIAGMN_26745 0.16 +3.4
5,207,858 - acnA NIAGMN_26745 0.21 +3.6
5,207,895 + acnA NIAGMN_26745 0.22 +0.7
5,207,899 + acnA NIAGMN_26745 0.22 +1.8

Or see this region's nucleotide sequence