Strain Fitness in Escherichia coli ECRC102 around NIAGMN_26315

Experiment: L-Arabinose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntrecT and rcbA are separated by 242 nucleotidesrcbA and xisR are separated by 99 nucleotidesxisR and fimB are separated by 1 nucleotides NIAGMN_26300: recT - recombination protein RecT, at 5,122,247 to 5,123,056 recT NIAGMN_26305: rcbA - Double-strand break reduction protein, at 5,123,299 to 5,123,487 rcbA NIAGMN_26315: xisR - excisionase XisR, at 5,123,587 to 5,123,802 xisR NIAGMN_26320: fimB - site-specific integrase, at 5,123,804 to 5,125,039 fimB Position (kb) 5123 5124Strain fitness (log2 ratio) -2 -1 0 1at 5123.804 kb on - strandat 5124.293 kb on + strand, within fimBat 5124.583 kb on + strand, within fimBat 5124.583 kb on + strand, within fimBat 5124.630 kb on + strand, within fimBat 5124.707 kb on + strand, within fimBat 5124.707 kb on + strand, within fimB

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
remove
5,123,804 - -2.2
5,124,293 + fimB NIAGMN_26320 0.40 -0.7
5,124,583 + fimB NIAGMN_26320 0.63 -1.3
5,124,583 + fimB NIAGMN_26320 0.63 +1.6
5,124,630 + fimB NIAGMN_26320 0.67 -1.0
5,124,707 + fimB NIAGMN_26320 0.73 -2.0
5,124,707 + fimB NIAGMN_26320 0.73 -1.2

Or see this region's nucleotide sequence