Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hslJ and ydbJ overlap by 4 nucleotides ydbJ and nifJ are separated by 273 nucleotides nifJ and NIAGMN_25955 are separated by 365 nucleotides NIAGMN_25955 and NIAGMN_25960 overlap by 26 nucleotides
NIAGMN_25935: hslJ - heat shock protein HslJ, at 5,066,656 to 5,067,078
hslJ
NIAGMN_25940: ydbJ - Uncharacterized protein YdbJ, at 5,067,075 to 5,067,341
ydbJ
NIAGMN_25945: nifJ - pyruvate:ferredoxin (flavodoxin) oxidoreductase, at 5,067,615 to 5,071,139
nifJ
NIAGMN_25955: NIAGMN_25955 - Putative outer membrane protein, at 5,071,505 to 5,071,876
_25955
NIAGMN_25960: NIAGMN_25960 - hypothetical protein, at 5,071,851 to 5,072,618
_25960
Position (kb) 5067
5068
5069
5070
5071
5072 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5066.708 kb on + strand, within hslJ at 5067.047 kb on + strand at 5067.048 kb on - strand at 5067.055 kb on - strand at 5067.055 kb on - strand at 5067.385 kb on + strand at 5067.557 kb on - strand at 5067.559 kb on + strand at 5067.603 kb on + strand at 5068.172 kb on + strand, within nifJ at 5068.309 kb on - strand, within nifJ at 5068.750 kb on + strand, within nifJ at 5069.049 kb on + strand, within nifJ at 5069.107 kb on - strand, within nifJ at 5069.235 kb on + strand, within nifJ at 5069.292 kb on - strand, within nifJ at 5069.821 kb on - strand, within nifJ at 5069.821 kb on - strand, within nifJ at 5070.545 kb on - strand, within nifJ at 5070.648 kb on - strand, within nifJ at 5070.708 kb on + strand, within nifJ at 5070.709 kb on - strand, within nifJ at 5071.896 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 5,066,708 + hslJ NIAGMN_25935 0.12 +2.5 5,067,047 + +1.4 5,067,048 - +0.9 5,067,055 - +1.3 5,067,055 - +0.9 5,067,385 + -0.3 5,067,557 - -0.1 5,067,559 + +0.5 5,067,603 + +0.7 5,068,172 + nifJ NIAGMN_25945 0.16 +0.3 5,068,309 - nifJ NIAGMN_25945 0.20 -0.4 5,068,750 + nifJ NIAGMN_25945 0.32 -0.8 5,069,049 + nifJ NIAGMN_25945 0.41 -0.5 5,069,107 - nifJ NIAGMN_25945 0.42 -1.4 5,069,235 + nifJ NIAGMN_25945 0.46 -0.8 5,069,292 - nifJ NIAGMN_25945 0.48 -1.0 5,069,821 - nifJ NIAGMN_25945 0.63 -1.8 5,069,821 - nifJ NIAGMN_25945 0.63 -0.0 5,070,545 - nifJ NIAGMN_25945 0.83 -2.1 5,070,648 - nifJ NIAGMN_25945 0.86 -1.9 5,070,708 + nifJ NIAGMN_25945 0.88 +0.2 5,070,709 - nifJ NIAGMN_25945 0.88 +3.3 5,071,896 - -1.3
Or see this region's nucleotide sequence