Strain Fitness in Escherichia coli ECRC102 around NIAGMN_25790

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydcJ and ydcI are separated by 216 nucleotidesydcI and trg are separated by 37 nucleotides NIAGMN_25785: ydcJ - Uncharacterized protein YdcJ, at 5,031,761 to 5,033,104 ydcJ NIAGMN_25790: ydcI - Uncharacterized HTH-type transcriptional regulator YdcI, at 5,033,321 to 5,034,244 ydcI NIAGMN_25795: trg - methyl-accepting chemotaxis protein Trg, at 5,034,282 to 5,035,922 trg Position (kb) 5033 5034 5035Strain fitness (log2 ratio) -2 -1 0 1 2at 5032.421 kb on - strand, within ydcJat 5032.608 kb on + strand, within ydcJat 5033.040 kb on + strandat 5033.140 kb on - strandat 5033.371 kb on + strandat 5033.458 kb on - strand, within ydcIat 5033.521 kb on + strand, within ydcIat 5033.521 kb on + strand, within ydcIat 5033.521 kb on + strand, within ydcIat 5033.617 kb on + strand, within ydcIat 5033.647 kb on + strand, within ydcIat 5033.896 kb on - strand, within ydcIat 5033.974 kb on - strand, within ydcIat 5034.358 kb on - strandat 5034.376 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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5,032,421 - ydcJ NIAGMN_25785 0.49 -1.9
5,032,608 + ydcJ NIAGMN_25785 0.63 -2.7
5,033,040 + -0.5
5,033,140 - -0.6
5,033,371 + -0.8
5,033,458 - ydcI NIAGMN_25790 0.15 -0.4
5,033,521 + ydcI NIAGMN_25790 0.22 +0.9
5,033,521 + ydcI NIAGMN_25790 0.22 +1.8
5,033,521 + ydcI NIAGMN_25790 0.22 -2.3
5,033,617 + ydcI NIAGMN_25790 0.32 +0.7
5,033,647 + ydcI NIAGMN_25790 0.35 +1.4
5,033,896 - ydcI NIAGMN_25790 0.62 +0.9
5,033,974 - ydcI NIAGMN_25790 0.71 +0.4
5,034,358 - +1.2
5,034,376 - +0.4

Or see this region's nucleotide sequence