Strain Fitness in Escherichia coli ECRC102 around NIAGMN_25760

Experiment: L-Arabinose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntydcL and tehB are separated by 303 nucleotidestehB and tehA overlap by 4 nucleotidestehA and ydcK are separated by 123 nucleotides NIAGMN_25750: ydcL - Uncharacterized lipoprotein YdcL, at 5,025,265 to 5,025,933 ydcL NIAGMN_25755: tehB - tellurite resistance methyltransferase TehB, at 5,026,237 to 5,026,830 tehB NIAGMN_25760: tehA - dicarboxylate transporter/tellurite-resistance protein TehA, at 5,026,827 to 5,027,819 tehA NIAGMN_25765: ydcK - YdcK family protein, at 5,027,943 to 5,028,923 ydcK Position (kb) 5026 5027 5028Strain fitness (log2 ratio) -2 -1 0 1at 5025.898 kb on + strandat 5026.130 kb on + strandat 5026.363 kb on + strand, within tehBat 5026.364 kb on - strand, within tehBat 5027.028 kb on + strand, within tehAat 5027.060 kb on + strand, within tehAat 5027.078 kb on - strand, within tehAat 5027.921 kb on - strandat 5028.630 kb on + strand, within ydcKat 5028.669 kb on - strand, within ydcK

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
remove
5,025,898 + -1.4
5,026,130 + +0.3
5,026,363 + tehB NIAGMN_25755 0.21 -0.8
5,026,364 - tehB NIAGMN_25755 0.21 +1.1
5,027,028 + tehA NIAGMN_25760 0.20 +0.3
5,027,060 + tehA NIAGMN_25760 0.23 -0.5
5,027,078 - tehA NIAGMN_25760 0.25 -1.6
5,027,921 - -2.1
5,028,630 + ydcK NIAGMN_25765 0.70 +0.5
5,028,669 - ydcK NIAGMN_25765 0.74 -1.4

Or see this region's nucleotide sequence