Strain Fitness in Escherichia coli ECRC102 around NIAGMN_25655

Experiment: L-Arabinose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntyncE and yncD are separated by 241 nucleotidesyncD and mcbR are separated by 35 nucleotidesmcbR and curA are separated by 197 nucleotides NIAGMN_25650: yncE - Uncharacterized protein YncE, at 5,005,770 to 5,006,831 yncE NIAGMN_25655: yncD - putative TonB-dependent receptor YncD, at 5,007,073 to 5,009,175 yncD NIAGMN_25660: mcbR - colanic acid/biofilm transcriptional regulator McbR, at 5,009,211 to 5,009,876 mcbR NIAGMN_25665: curA - NADPH-dependent curcumin/dihydrocurcumin reductase, at 5,010,074 to 5,011,111 curA Position (kb) 5007 5008 5009 5010Strain fitness (log2 ratio) -2 -1 0 1 2at 5006.485 kb on - strand, within yncEat 5006.712 kb on - strand, within yncEat 5006.788 kb on - strandat 5006.889 kb on - strandat 5007.391 kb on + strand, within yncDat 5007.525 kb on - strand, within yncDat 5007.576 kb on + strand, within yncDat 5007.664 kb on + strand, within yncDat 5007.933 kb on + strand, within yncDat 5007.970 kb on + strand, within yncDat 5008.070 kb on - strand, within yncDat 5008.614 kb on + strand, within yncDat 5009.174 kb on - strandat 5009.221 kb on + strandat 5009.375 kb on - strand, within mcbRat 5010.009 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
remove
5,006,485 - yncE NIAGMN_25650 0.67 +1.4
5,006,712 - yncE NIAGMN_25650 0.89 -0.8
5,006,788 - -1.3
5,006,889 - -0.2
5,007,391 + yncD NIAGMN_25655 0.15 +1.0
5,007,525 - yncD NIAGMN_25655 0.21 +0.4
5,007,576 + yncD NIAGMN_25655 0.24 +1.4
5,007,664 + yncD NIAGMN_25655 0.28 -0.4
5,007,933 + yncD NIAGMN_25655 0.41 +2.5
5,007,970 + yncD NIAGMN_25655 0.43 -0.4
5,008,070 - yncD NIAGMN_25655 0.47 -1.0
5,008,614 + yncD NIAGMN_25655 0.73 +2.0
5,009,174 - -0.9
5,009,221 + +2.4
5,009,375 - mcbR NIAGMN_25660 0.25 +1.3
5,010,009 + -1.9

Or see this region's nucleotide sequence