Strain Fitness in Escherichia coli ECRC102 around NIAGMN_25505

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntadhP and yddM are separated by 145 nucleotidesyddM and fdnI are separated by 227 nucleotidesfdnI and fdnH overlap by 8 nucleotidesfdnH and fdnG are separated by 12 nucleotides NIAGMN_25495: adhP - alcohol dehydrogenase AdhP, at 4,970,820 to 4,971,830 adhP NIAGMN_25500: yddM - HigA family addiction module antitoxin, at 4,971,976 to 4,972,260 yddM NIAGMN_25505: fdnI - formate dehydrogenase-N subunit gamma, at 4,972,488 to 4,973,141 fdnI NIAGMN_25510: fdnH - formate dehydrogenase N subunit beta, at 4,973,134 to 4,974,018 fdnH NIAGMN_25515: fdnG - formate dehydrogenase-N subunit alpha, at 4,974,031 to 4,977,078 fdnG Position (kb) 4972 4973 4974Strain fitness (log2 ratio) -2 -1 0 1at 4971.689 kb on - strand, within adhPat 4972.011 kb on + strand, within yddMat 4972.035 kb on + strand, within yddMat 4972.490 kb on - strandat 4972.630 kb on + strand, within fdnIat 4972.630 kb on + strand, within fdnIat 4972.631 kb on - strand, within fdnIat 4972.631 kb on - strand, within fdnIat 4972.858 kb on - strand, within fdnIat 4973.343 kb on - strand, within fdnHat 4973.343 kb on - strand, within fdnHat 4973.544 kb on + strand, within fdnHat 4973.658 kb on - strand, within fdnHat 4973.943 kb on - strandat 4974.115 kb on - strandat 4974.119 kb on - strandat 4974.119 kb on - strandat 4974.123 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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4,971,689 - adhP NIAGMN_25495 0.86 -1.2
4,972,011 + yddM NIAGMN_25500 0.12 -0.1
4,972,035 + yddM NIAGMN_25500 0.21 +0.9
4,972,490 - +0.2
4,972,630 + fdnI NIAGMN_25505 0.22 +0.6
4,972,630 + fdnI NIAGMN_25505 0.22 +1.4
4,972,631 - fdnI NIAGMN_25505 0.22 -0.9
4,972,631 - fdnI NIAGMN_25505 0.22 -0.4
4,972,858 - fdnI NIAGMN_25505 0.57 +1.2
4,973,343 - fdnH NIAGMN_25510 0.24 -1.6
4,973,343 - fdnH NIAGMN_25510 0.24 +0.0
4,973,544 + fdnH NIAGMN_25510 0.46 +0.5
4,973,658 - fdnH NIAGMN_25510 0.59 -2.1
4,973,943 - -0.5
4,974,115 - +0.5
4,974,119 - +0.2
4,974,119 - -1.3
4,974,123 - -1.7

Or see this region's nucleotide sequence