Strain Fitness in Escherichia coli ECRC102 around NIAGMN_25385

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydeP and safA are separated by 247 nucleotidessafA and ydeO are separated by 73 nucleotidesydeO and ydeN are separated by 403 nucleotides NIAGMN_25375: ydeP - acid resistance putative oxidoreductase YdeP, at 4,938,170 to 4,940,449 ydeP NIAGMN_25380: safA - two-component system connector SafA, at 4,940,697 to 4,940,894 safA NIAGMN_25385: ydeO - acid stress response transcriptional regulator YdeO, at 4,940,968 to 4,941,729 ydeO NIAGMN_25390: ydeN - Uncharacterized sulfatase YdeN, at 4,942,133 to 4,943,815 ydeN Position (kb) 4940 4941 4942Strain fitness (log2 ratio) -1 0 1at 4940.126 kb on + strand, within ydePat 4940.147 kb on - strand, within ydePat 4940.639 kb on - strandat 4942.107 kb on + strandat 4942.133 kb on - strandat 4942.429 kb on + strand, within ydeN

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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4,940,126 + ydeP NIAGMN_25375 0.86 -0.1
4,940,147 - ydeP NIAGMN_25375 0.87 -0.3
4,940,639 - +1.0
4,942,107 + -1.2
4,942,133 - -0.1
4,942,429 + ydeN NIAGMN_25390 0.18 +1.6

Or see this region's nucleotide sequence