Strain Fitness in Escherichia coli ECRC102 around NIAGMN_25240

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydeA and yneK are separated by 150 nucleotidesyneK and yneK are separated by 78 nucleotidesyneK and yneJ are separated by 77 nucleotides NIAGMN_25235: ydeA - L-arabinose MFS transporter, at 4,903,272 to 4,904,462 ydeA NIAGMN_25240: yneK - putative protein YneK, at 4,904,613 to 4,904,861 yneK NIAGMN_25245: yneK - putative protein YneK, at 4,904,940 to 4,905,728 yneK NIAGMN_25250: yneJ - Uncharacterized HTH-type transcriptional regulator YneJ, at 4,905,806 to 4,906,687 yneJ Position (kb) 4904 4905Strain fitness (log2 ratio) -2 -1 0 1at 4903.633 kb on - strand, within ydeAat 4903.633 kb on - strand, within ydeAat 4903.772 kb on - strand, within ydeAat 4903.772 kb on - strand, within ydeAat 4903.772 kb on - strand, within ydeAat 4903.772 kb on - strand, within ydeAat 4903.851 kb on + strand, within ydeAat 4903.907 kb on + strand, within ydeAat 4904.007 kb on + strand, within ydeAat 4904.007 kb on + strand, within ydeAat 4904.011 kb on - strand, within ydeAat 4904.293 kb on + strand, within ydeA

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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4,903,633 - ydeA NIAGMN_25235 0.30 +1.7
4,903,633 - ydeA NIAGMN_25235 0.30 +1.5
4,903,772 - ydeA NIAGMN_25235 0.42 -0.3
4,903,772 - ydeA NIAGMN_25235 0.42 -1.3
4,903,772 - ydeA NIAGMN_25235 0.42 +0.9
4,903,772 - ydeA NIAGMN_25235 0.42 -1.8
4,903,851 + ydeA NIAGMN_25235 0.49 +0.4
4,903,907 + ydeA NIAGMN_25235 0.53 +1.6
4,904,007 + ydeA NIAGMN_25235 0.62 +1.6
4,904,007 + ydeA NIAGMN_25235 0.62 +1.0
4,904,011 - ydeA NIAGMN_25235 0.62 +0.5
4,904,293 + ydeA NIAGMN_25235 0.86 +1.2

Or see this region's nucleotide sequence