Strain Fitness in Escherichia coli ECRC102 around NIAGMN_24905

Experiment: L-Arabinose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntnudJ and rluE are separated by 9 nucleotidesrluE and icd are separated by 171 nucleotidesicd and int are separated by 113 nucleotides NIAGMN_24895: nudJ - phosphatase NudJ, at 4,849,297 to 4,849,758 nudJ NIAGMN_24900: rluE - 23S rRNA pseudouridine(2457) synthase RluE, at 4,849,768 to 4,850,421 rluE NIAGMN_24905: icd - NADP-dependent isocitrate dehydrogenase, at 4,850,593 to 4,851,843 icd NIAGMN_24910: int - Integrase, at 4,851,957 to 4,853,099 int Position (kb) 4850 4851 4852Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4849.678 kb on - strand, within nudJat 4849.727 kb on - strandat 4849.770 kb on - strandat 4849.770 kb on - strandat 4849.894 kb on - strand, within rluEat 4849.894 kb on - strand, within rluEat 4849.904 kb on + strand, within rluEat 4849.905 kb on - strand, within rluEat 4849.905 kb on - strand, within rluEat 4849.905 kb on - strand, within rluEat 4849.905 kb on - strand, within rluEat 4849.907 kb on - strand, within rluEat 4849.907 kb on - strand, within rluEat 4849.907 kb on - strand, within rluEat 4850.036 kb on - strand, within rluEat 4850.279 kb on + strand, within rluEat 4850.394 kb on + strandat 4850.424 kb on + strandat 4851.841 kb on + strandat 4851.848 kb on + strandat 4851.848 kb on + strandat 4852.221 kb on - strand, within int

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
remove
4,849,678 - nudJ NIAGMN_24895 0.82 -1.5
4,849,727 - -1.3
4,849,770 - +2.0
4,849,770 - -1.1
4,849,894 - rluE NIAGMN_24900 0.19 -1.3
4,849,894 - rluE NIAGMN_24900 0.19 +1.2
4,849,904 + rluE NIAGMN_24900 0.21 +0.0
4,849,905 - rluE NIAGMN_24900 0.21 +0.8
4,849,905 - rluE NIAGMN_24900 0.21 +0.1
4,849,905 - rluE NIAGMN_24900 0.21 -0.3
4,849,905 - rluE NIAGMN_24900 0.21 +3.3
4,849,907 - rluE NIAGMN_24900 0.21 -2.0
4,849,907 - rluE NIAGMN_24900 0.21 -1.0
4,849,907 - rluE NIAGMN_24900 0.21 -0.1
4,850,036 - rluE NIAGMN_24900 0.41 -0.1
4,850,279 + rluE NIAGMN_24900 0.78 -0.9
4,850,394 + +3.2
4,850,424 + -0.7
4,851,841 + -1.0
4,851,848 + -0.1
4,851,848 + -2.0
4,852,221 - int NIAGMN_24910 0.23 -2.3

Or see this region's nucleotide sequence