Strain Fitness in Escherichia coli ECRC102 around NIAGMN_24130

Experiment: L-Arabinose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntrimJ and yceH are separated by 10 nucleotidesyceH and yceM are separated by 1 nucleotidesyceM and murJ are separated by 109 nucleotides NIAGMN_24120: rimJ - ribosomal protein S5-alanine N-acetyltransferase, at 4,718,448 to 4,719,032 rimJ NIAGMN_24125: yceH - UPF0502 protein YceH, at 4,719,043 to 4,719,690 yceH NIAGMN_24130: yceM - Putative oxidoreductase YceM, at 4,719,692 to 4,720,615 yceM NIAGMN_24135: murJ - murein biosynthesis integral membrane protein MurJ, at 4,720,725 to 4,722,260 murJ Position (kb) 4719 4720 4721Strain fitness (log2 ratio) -1 0 1 2 3at 4718.763 kb on + strand, within rimJat 4718.764 kb on - strand, within rimJat 4718.838 kb on + strand, within rimJat 4718.858 kb on + strand, within rimJat 4718.858 kb on + strand, within rimJat 4718.859 kb on - strand, within rimJat 4718.859 kb on - strand, within rimJat 4718.881 kb on - strand, within rimJat 4718.943 kb on + strand, within rimJat 4718.989 kb on + strandat 4719.001 kb on + strandat 4719.143 kb on + strand, within yceHat 4719.430 kb on - strand, within yceHat 4719.706 kb on + strandat 4719.783 kb on + strandat 4719.934 kb on + strand, within yceMat 4719.954 kb on + strand, within yceMat 4719.955 kb on - strand, within yceMat 4720.055 kb on - strand, within yceMat 4720.135 kb on + strand, within yceMat 4720.141 kb on + strand, within yceMat 4720.184 kb on + strand, within yceMat 4720.327 kb on + strand, within yceMat 4720.327 kb on + strand, within yceMat 4720.328 kb on - strand, within yceM

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
remove
4,718,763 + rimJ NIAGMN_24120 0.54 -0.2
4,718,764 - rimJ NIAGMN_24120 0.54 -1.0
4,718,838 + rimJ NIAGMN_24120 0.67 -1.7
4,718,858 + rimJ NIAGMN_24120 0.70 +1.1
4,718,858 + rimJ NIAGMN_24120 0.70 +0.5
4,718,859 - rimJ NIAGMN_24120 0.70 -0.6
4,718,859 - rimJ NIAGMN_24120 0.70 +0.0
4,718,881 - rimJ NIAGMN_24120 0.74 +2.8
4,718,943 + rimJ NIAGMN_24120 0.85 +0.0
4,718,989 + +1.8
4,719,001 + +1.3
4,719,143 + yceH NIAGMN_24125 0.15 +0.4
4,719,430 - yceH NIAGMN_24125 0.60 +1.4
4,719,706 + -0.6
4,719,783 + +0.0
4,719,934 + yceM NIAGMN_24130 0.26 +0.2
4,719,954 + yceM NIAGMN_24130 0.28 -0.3
4,719,955 - yceM NIAGMN_24130 0.28 +0.0
4,720,055 - yceM NIAGMN_24130 0.39 +2.9
4,720,135 + yceM NIAGMN_24130 0.48 +2.0
4,720,141 + yceM NIAGMN_24130 0.49 +2.7
4,720,184 + yceM NIAGMN_24130 0.53 +1.6
4,720,327 + yceM NIAGMN_24130 0.69 -1.2
4,720,327 + yceM NIAGMN_24130 0.69 +0.5
4,720,328 - yceM NIAGMN_24130 0.69 +0.8

Or see this region's nucleotide sequence