Strain Fitness in Escherichia coli ECRC102 around NIAGMN_23945

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntycdU and Ser_trna are separated by 192 nucleotidesSer_trna and ghrA are separated by 233 nucleotides NIAGMN_23940: ycdU - Uncharacterized protein YcdU, at 4,689,268 to 4,690,254 ycdU NIAGMN_23945: Ser_trna - tRNA-Ser(gga), at 4,690,447 to 4,690,534 _trna NIAGMN_23950: ghrA - glyoxylate/hydroxypyruvate reductase GhrA, at 4,690,768 to 4,691,706 ghrA Position (kb) 4690 4691Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4689.607 kb on + strand, within ycdUat 4690.285 kb on + strandat 4690.285 kb on + strandat 4690.288 kb on - strandat 4690.288 kb on - strandat 4690.401 kb on - strandat 4690.428 kb on - strandat 4690.441 kb on + strandat 4690.696 kb on + strandat 4690.696 kb on + strandat 4690.713 kb on + strandat 4690.720 kb on + strandat 4690.834 kb on - strandat 4691.072 kb on - strand, within ghrAat 4691.117 kb on - strand, within ghrAat 4691.368 kb on - strand, within ghrA

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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4,689,607 + ycdU NIAGMN_23940 0.34 +0.9
4,690,285 + +1.4
4,690,285 + +3.3
4,690,288 - -0.0
4,690,288 - +0.3
4,690,401 - +2.8
4,690,428 - +0.3
4,690,441 + +0.5
4,690,696 + +0.3
4,690,696 + +1.6
4,690,713 + -1.3
4,690,720 + +4.0
4,690,834 - -2.3
4,691,072 - ghrA NIAGMN_23950 0.32 -2.1
4,691,117 - ghrA NIAGMN_23950 0.37 +0.4
4,691,368 - ghrA NIAGMN_23950 0.64 -0.1

Or see this region's nucleotide sequence