Strain Fitness in Escherichia coli ECRC102 around NIAGMN_22390

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_22385 and wcaG are separated by 2 nucleotideswcaG and wbdQ are separated by 2 nucleotideswbdQ and manC2 overlap by 19 nucleotides NIAGMN_22385: NIAGMN_22385 - GDP-mannose 4,6-dehydratase, at 4,419,510 to 4,420,628 _22385 NIAGMN_22390: wcaG - GDP-fucose synthetase, at 4,420,631 to 4,421,596 wcaG NIAGMN_22395: wbdQ - GDP-mannose mannosyl hydrolase WbdQ/WbhG, at 4,421,599 to 4,422,108 wbdQ NIAGMN_22400: manC2 - mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase, at 4,422,090 to 4,423,538 manC2 Position (kb) 4420 4421 4422Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4419.810 kb on + strand, within NIAGMN_22385at 4420.211 kb on + strand, within NIAGMN_22385at 4420.322 kb on + strand, within NIAGMN_22385at 4420.369 kb on + strand, within NIAGMN_22385at 4421.633 kb on + strandat 4422.107 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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4,419,810 + NIAGMN_22385 0.27 -1.2
4,420,211 + NIAGMN_22385 0.63 -1.7
4,420,322 + NIAGMN_22385 0.73 -4.0
4,420,369 + NIAGMN_22385 0.77 -0.4
4,421,633 + -1.3
4,422,107 - +0.2

Or see this region's nucleotide sequence