Strain Fitness in Escherichia coli ECRC102 around NIAGMN_20895

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyfaL and ubiG are separated by 140 nucleotidesubiG and gyrA are separated by 146 nucleotides NIAGMN_20890: yfaL - AIDA-I family autotransporter adhesin YfaL/EhaC, at 4,130,406 to 4,134,158 yfaL NIAGMN_20895: ubiG - bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG, at 4,134,299 to 4,135,021 ubiG NIAGMN_20900: gyrA - DNA topoisomerase (ATP-hydrolyzing) subunit A, at 4,135,168 to 4,137,795 gyrA Position (kb) 4134 4135 4136Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4133.321 kb on + strand, within yfaLat 4133.321 kb on + strand, within yfaLat 4133.321 kb on + strand, within yfaLat 4133.372 kb on - strand, within yfaLat 4133.391 kb on + strand, within yfaLat 4133.397 kb on + strand, within yfaLat 4133.398 kb on - strand, within yfaLat 4133.439 kb on - strand, within yfaLat 4133.549 kb on + strand, within yfaLat 4133.754 kb on + strand, within yfaLat 4133.932 kb on + strandat 4133.999 kb on + strandat 4134.177 kb on + strandat 4134.228 kb on - strandat 4134.305 kb on - strandat 4135.032 kb on - strandat 4135.059 kb on - strandat 4135.059 kb on - strandat 4135.059 kb on - strandat 4135.060 kb on + strandat 4135.060 kb on + strandat 4135.060 kb on + strandat 4135.061 kb on - strandat 4135.080 kb on + strandat 4135.081 kb on - strandat 4135.089 kb on + strandat 4135.090 kb on - strandat 4135.096 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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4,133,321 + yfaL NIAGMN_20890 0.78 +3.0
4,133,321 + yfaL NIAGMN_20890 0.78 -0.1
4,133,321 + yfaL NIAGMN_20890 0.78 +1.6
4,133,372 - yfaL NIAGMN_20890 0.79 -1.0
4,133,391 + yfaL NIAGMN_20890 0.80 +0.6
4,133,397 + yfaL NIAGMN_20890 0.80 -1.2
4,133,398 - yfaL NIAGMN_20890 0.80 -2.0
4,133,439 - yfaL NIAGMN_20890 0.81 -1.0
4,133,549 + yfaL NIAGMN_20890 0.84 -1.7
4,133,754 + yfaL NIAGMN_20890 0.89 -0.5
4,133,932 + -0.1
4,133,999 + +0.9
4,134,177 + -0.4
4,134,228 - +1.8
4,134,305 - +0.8
4,135,032 - -0.2
4,135,059 - -1.5
4,135,059 - +1.9
4,135,059 - -0.8
4,135,060 + -3.2
4,135,060 + +1.0
4,135,060 + -0.1
4,135,061 - -0.0
4,135,080 + +0.4
4,135,081 - +0.3
4,135,089 + -1.1
4,135,090 - -0.2
4,135,096 - -0.5

Or see this region's nucleotide sequence