Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt arnA and arnC overlap by 1 nucleotides arnC and arnB are separated by 3 nucleotides arnB and ais are separated by 289 nucleotides ais and nudI are separated by 38 nucleotides
NIAGMN_20755: arnA - bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA, at 4,101,137 to 4,103,119
arnA
NIAGMN_20760: arnC - undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase, at 4,103,119 to 4,104,087
arnC
NIAGMN_20765: arnB - UDP-4-amino-4-deoxy-L-arabinose aminotransferase, at 4,104,091 to 4,105,248
arnB
NIAGMN_20770: ais - Lipopolysaccharide core heptose(II)-phosphate phosphatase, at 4,105,538 to 4,106,140
ais
NIAGMN_20775: nudI - nucleoside triphosphatase NudI, at 4,106,179 to 4,106,604
nudI
Position (kb) 4104
4105
4106 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4103.192 kb on + strand at 4103.248 kb on - strand, within arnC at 4103.270 kb on - strand, within arnC at 4103.385 kb on + strand, within arnC at 4103.386 kb on - strand, within arnC at 4103.386 kb on - strand, within arnC at 4103.386 kb on - strand, within arnC at 4103.386 kb on - strand, within arnC at 4103.386 kb on - strand, within arnC at 4103.390 kb on - strand, within arnC at 4103.446 kb on - strand, within arnC at 4103.469 kb on - strand, within arnC at 4103.580 kb on + strand, within arnC at 4103.800 kb on - strand, within arnC at 4103.875 kb on - strand, within arnC at 4103.879 kb on - strand, within arnC at 4103.879 kb on - strand, within arnC at 4103.883 kb on + strand, within arnC at 4103.883 kb on + strand, within arnC at 4103.918 kb on - strand, within arnC at 4103.920 kb on - strand, within arnC at 4103.920 kb on - strand, within arnC at 4103.966 kb on + strand, within arnC at 4104.039 kb on - strand at 4104.093 kb on - strand at 4104.280 kb on - strand, within arnB at 4104.351 kb on + strand, within arnB at 4104.352 kb on - strand, within arnB at 4104.431 kb on + strand, within arnB at 4104.524 kb on + strand, within arnB at 4104.542 kb on - strand, within arnB at 4104.652 kb on - strand, within arnB at 4104.729 kb on + strand, within arnB at 4104.746 kb on + strand, within arnB at 4104.746 kb on + strand, within arnB at 4104.747 kb on - strand, within arnB at 4104.750 kb on + strand, within arnB at 4104.750 kb on + strand, within arnB at 4104.751 kb on - strand, within arnB at 4104.778 kb on - strand, within arnB at 4104.819 kb on + strand, within arnB at 4104.823 kb on - strand, within arnB at 4104.967 kb on - strand, within arnB at 4105.044 kb on + strand, within arnB at 4105.044 kb on + strand, within arnB at 4105.045 kb on - strand, within arnB at 4105.045 kb on - strand, within arnB at 4105.254 kb on - strand at 4105.293 kb on - strand at 4105.337 kb on - strand at 4105.454 kb on + strand at 4105.657 kb on + strand, within ais at 4105.771 kb on + strand, within ais at 4105.914 kb on + strand, within ais at 4105.914 kb on + strand, within ais at 4106.027 kb on + strand, within ais at 4106.027 kb on + strand, within ais at 4106.027 kb on + strand, within ais at 4106.027 kb on + strand, within ais at 4106.027 kb on + strand, within ais at 4106.027 kb on + strand, within ais at 4106.029 kb on + strand, within ais
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,103,192 + +1.4 4,103,248 - arnC NIAGMN_20760 0.13 +0.9 4,103,270 - arnC NIAGMN_20760 0.16 +0.4 4,103,385 + arnC NIAGMN_20760 0.27 +0.5 4,103,386 - arnC NIAGMN_20760 0.28 -1.3 4,103,386 - arnC NIAGMN_20760 0.28 +3.2 4,103,386 - arnC NIAGMN_20760 0.28 +2.3 4,103,386 - arnC NIAGMN_20760 0.28 +2.1 4,103,386 - arnC NIAGMN_20760 0.28 +0.4 4,103,390 - arnC NIAGMN_20760 0.28 +0.7 4,103,446 - arnC NIAGMN_20760 0.34 -1.3 4,103,469 - arnC NIAGMN_20760 0.36 -0.7 4,103,580 + arnC NIAGMN_20760 0.48 -0.5 4,103,800 - arnC NIAGMN_20760 0.70 +0.3 4,103,875 - arnC NIAGMN_20760 0.78 +0.4 4,103,879 - arnC NIAGMN_20760 0.78 +0.3 4,103,879 - arnC NIAGMN_20760 0.78 -1.8 4,103,883 + arnC NIAGMN_20760 0.79 +1.6 4,103,883 + arnC NIAGMN_20760 0.79 +0.5 4,103,918 - arnC NIAGMN_20760 0.82 +1.1 4,103,920 - arnC NIAGMN_20760 0.83 -1.0 4,103,920 - arnC NIAGMN_20760 0.83 -0.7 4,103,966 + arnC NIAGMN_20760 0.87 -2.4 4,104,039 - -2.4 4,104,093 - +0.5 4,104,280 - arnB NIAGMN_20765 0.16 -2.0 4,104,351 + arnB NIAGMN_20765 0.22 -1.7 4,104,352 - arnB NIAGMN_20765 0.23 -0.0 4,104,431 + arnB NIAGMN_20765 0.29 +1.9 4,104,524 + arnB NIAGMN_20765 0.37 +0.9 4,104,542 - arnB NIAGMN_20765 0.39 +1.5 4,104,652 - arnB NIAGMN_20765 0.48 -0.2 4,104,729 + arnB NIAGMN_20765 0.55 +0.4 4,104,746 + arnB NIAGMN_20765 0.57 -0.3 4,104,746 + arnB NIAGMN_20765 0.57 +0.6 4,104,747 - arnB NIAGMN_20765 0.57 +1.8 4,104,750 + arnB NIAGMN_20765 0.57 +1.3 4,104,750 + arnB NIAGMN_20765 0.57 +0.3 4,104,751 - arnB NIAGMN_20765 0.57 +1.1 4,104,778 - arnB NIAGMN_20765 0.59 +0.9 4,104,819 + arnB NIAGMN_20765 0.63 +0.8 4,104,823 - arnB NIAGMN_20765 0.63 +0.9 4,104,967 - arnB NIAGMN_20765 0.76 +0.1 4,105,044 + arnB NIAGMN_20765 0.82 +1.1 4,105,044 + arnB NIAGMN_20765 0.82 +0.2 4,105,045 - arnB NIAGMN_20765 0.82 -0.2 4,105,045 - arnB NIAGMN_20765 0.82 +0.8 4,105,254 - +0.0 4,105,293 - -1.9 4,105,337 - +1.2 4,105,454 + +2.8 4,105,657 + ais NIAGMN_20770 0.20 +0.4 4,105,771 + ais NIAGMN_20770 0.39 -2.3 4,105,914 + ais NIAGMN_20770 0.62 +0.2 4,105,914 + ais NIAGMN_20770 0.62 -1.2 4,106,027 + ais NIAGMN_20770 0.81 +0.5 4,106,027 + ais NIAGMN_20770 0.81 +0.4 4,106,027 + ais NIAGMN_20770 0.81 -0.9 4,106,027 + ais NIAGMN_20770 0.81 -0.6 4,106,027 + ais NIAGMN_20770 0.81 -1.6 4,106,027 + ais NIAGMN_20770 0.81 -0.0 4,106,029 + ais NIAGMN_20770 0.81 -1.9
Or see this region's nucleotide sequence