Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nuoN and yfbM are separated by 66 nucleotides
NIAGMN_20670: nuoN - NADH-quinone oxidoreductase subunit NuoN, at 4,084,063 to 4,085,520
nuoN
NIAGMN_20675: yfbM - Protein YfbM, at 4,085,587 to 4,086,090
yfbM
Position (kb)
4085
4086
4087 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4084.595 kb on - strand, within nuoN at 4084.751 kb on + strand, within nuoN at 4084.751 kb on + strand, within nuoN at 4084.752 kb on - strand, within nuoN at 4084.754 kb on - strand, within nuoN at 4084.969 kb on - strand, within nuoN at 4084.969 kb on - strand, within nuoN at 4085.252 kb on - strand, within nuoN at 4085.329 kb on + strand, within nuoN at 4085.329 kb on + strand, within nuoN at 4085.329 kb on + strand, within nuoN at 4085.330 kb on - strand, within nuoN at 4085.332 kb on + strand, within nuoN at 4085.333 kb on - strand, within nuoN at 4085.335 kb on + strand, within nuoN at 4085.335 kb on + strand, within nuoN at 4085.335 kb on + strand, within nuoN at 4085.336 kb on - strand, within nuoN at 4085.410 kb on + strand at 4085.468 kb on + strand at 4085.469 kb on - strand at 4085.491 kb on - strand at 4085.518 kb on + strand at 4085.518 kb on + strand at 4085.518 kb on + strand at 4085.518 kb on + strand at 4085.519 kb on - strand at 4085.519 kb on - strand at 4085.519 kb on - strand at 4085.523 kb on + strand at 4085.524 kb on - strand at 4085.533 kb on + strand at 4085.696 kb on - strand, within yfbM at 4085.849 kb on - strand, within yfbM at 4085.849 kb on - strand, within yfbM at 4086.004 kb on - strand, within yfbM at 4086.004 kb on - strand, within yfbM at 4086.154 kb on - strand at 4086.294 kb on + strand at 4086.319 kb on - strand at 4086.645 kb on + strand at 4086.661 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,084,595 - nuoN NIAGMN_20670 0.36 -1.2 4,084,751 + nuoN NIAGMN_20670 0.47 -1.0 4,084,751 + nuoN NIAGMN_20670 0.47 -1.5 4,084,752 - nuoN NIAGMN_20670 0.47 -1.3 4,084,754 - nuoN NIAGMN_20670 0.47 -0.4 4,084,969 - nuoN NIAGMN_20670 0.62 +0.2 4,084,969 - nuoN NIAGMN_20670 0.62 +0.5 4,085,252 - nuoN NIAGMN_20670 0.82 +3.1 4,085,329 + nuoN NIAGMN_20670 0.87 -0.9 4,085,329 + nuoN NIAGMN_20670 0.87 -0.6 4,085,329 + nuoN NIAGMN_20670 0.87 -0.9 4,085,330 - nuoN NIAGMN_20670 0.87 -1.3 4,085,332 + nuoN NIAGMN_20670 0.87 -0.1 4,085,333 - nuoN NIAGMN_20670 0.87 -0.5 4,085,335 + nuoN NIAGMN_20670 0.87 -0.8 4,085,335 + nuoN NIAGMN_20670 0.87 -0.0 4,085,335 + nuoN NIAGMN_20670 0.87 -1.0 4,085,336 - nuoN NIAGMN_20670 0.87 -0.0 4,085,410 + -0.5 4,085,468 + -1.4 4,085,469 - +1.4 4,085,491 - -1.7 4,085,518 + +0.1 4,085,518 + +1.1 4,085,518 + +0.2 4,085,518 + -1.3 4,085,519 - +0.8 4,085,519 - -2.0 4,085,519 - -0.0 4,085,523 + +0.4 4,085,524 - +1.3 4,085,533 + -0.3 4,085,696 - yfbM NIAGMN_20675 0.22 -0.5 4,085,849 - yfbM NIAGMN_20675 0.52 +2.1 4,085,849 - yfbM NIAGMN_20675 0.52 +0.2 4,086,004 - yfbM NIAGMN_20675 0.83 +2.1 4,086,004 - yfbM NIAGMN_20675 0.83 -1.4 4,086,154 - -0.8 4,086,294 + +2.8 4,086,319 - +2.9 4,086,645 + -0.8 4,086,661 - -0.0
Or see this region's nucleotide sequence