Strain Fitness in Escherichia coli ECRC102 around NIAGMN_19935

Experiment: L-Arabinose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Arabinose
3,936,437	+	cysT	NIAGMN_19925	0.85	+0.3
3,936,516	+				-0.0
3,936,516	+				-0.2
3,936,559	+				-0.0
3,936,678	+	cysW	NIAGMN_19930	0.13	-2.2
3,936,678	+	cysW	NIAGMN_19930	0.13	-0.0
3,936,721	+	cysW	NIAGMN_19930	0.18	-0.0
3,936,862	+	cysW	NIAGMN_19930	0.34	-1.5
3,936,862	+	cysW	NIAGMN_19930	0.34	+0.0
3,936,975	-	cysW	NIAGMN_19930	0.47	-1.7
3,936,975	-	cysW	NIAGMN_19930	0.47	-0.0
3,936,986	+	cysW	NIAGMN_19930	0.49	-3.2
3,937,069	+	cysW	NIAGMN_19930	0.58	-3.9
3,937,173	+	cysW	NIAGMN_19930	0.70	-2.6
3,937,296	+	cysW	NIAGMN_19930	0.84	-1.4
3,937,296	+	cysW	NIAGMN_19930	0.84	-2.2
3,937,296	+	cysW	NIAGMN_19930	0.84	-0.0
3,937,370	+				-1.6
3,937,599	+	cysA	NIAGMN_19935	0.16	+0.5
3,937,647	+	cysA	NIAGMN_19935	0.20	-1.0
3,937,689	+	cysA	NIAGMN_19935	0.24	-1.0
3,937,689	+	cysA	NIAGMN_19935	0.24	-2.1
3,937,689	+	cysA	NIAGMN_19935	0.24	-0.8
3,937,689	+	cysA	NIAGMN_19935	0.24	-3.7
3,938,033	+	cysA	NIAGMN_19935	0.55	+0.6
3,938,045	+	cysA	NIAGMN_19935	0.56	-1.0
3,938,096	+	cysA	NIAGMN_19935	0.61	-0.9
3,938,338	+	cysA	NIAGMN_19935	0.83	-3.4
3,938,338	+	cysA	NIAGMN_19935	0.83	-3.4
3,938,371	+	cysA	NIAGMN_19935	0.86	+0.1
3,938,371	+	cysA	NIAGMN_19935	0.86	-2.6
3,938,371	+	cysA	NIAGMN_19935	0.86	-1.8
3,938,461	+				-1.6
3,938,461	+				-0.2
3,938,643	+				+1.1
3,938,643	+				+1.4
3,938,643	+				-0.7
3,938,644	-				-1.6
3,938,662	+				+0.5
3,938,662	+				-0.2
3,938,667	+				+1.2
3,938,668	-				-1.3
3,938,679	+				-1.4
3,938,686	+				+1.2
3,938,742	+				-3.5
3,938,742	+				-1.6
3,938,742	+				-0.9
3,938,847	+	cysM	NIAGMN_19940	0.21	-1.3
3,938,866	+	cysM	NIAGMN_19940	0.23	+0.2
3,939,082	+	cysM	NIAGMN_19940	0.47	-1.3
3,939,082	+	cysM	NIAGMN_19940	0.47	-1.6
3,939,107	+	cysM	NIAGMN_19940	0.49	-2.6
3,939,158	+	cysM	NIAGMN_19940	0.55	+1.2
3,939,158	+	cysM	NIAGMN_19940	0.55	-0.7
3,939,158	+	cysM	NIAGMN_19940	0.55	-0.7
3,939,158	+	cysM	NIAGMN_19940	0.55	-3.5
3,939,158	+	cysM	NIAGMN_19940	0.55	-0.9
3,939,268	+	cysM	NIAGMN_19940	0.67	-2.8
3,939,269	-	cysM	NIAGMN_19940	0.67	+1.2
3,939,302	+	cysM	NIAGMN_19940	0.71	-1.6
3,939,333	+	cysM	NIAGMN_19940	0.74	-0.0
3,939,349	+	cysM	NIAGMN_19940	0.76	-2.2
3,939,405	+	cysM	NIAGMN_19940	0.82	+0.9
3,939,463	+	cysM	NIAGMN_19940	0.88	-2.8