Strain Fitness in Escherichia coli ECRC102 around NIAGMN_18800

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_18795 and NIAGMN_18800 are separated by 90 nucleotidesNIAGMN_18800 and NIAGMN_18815 are separated by 240 nucleotides NIAGMN_18795: NIAGMN_18795 - Membrane protein, at 3,714,164 to 3,714,907 _18795 NIAGMN_18800: NIAGMN_18800 - hypothetical protein, at 3,714,998 to 3,715,327 _18800 NIAGMN_18815: NIAGMN_18815 - DUF1737 domain-containing protein, at 3,715,568 to 3,717,421 _18815 Position (kb) 3714 3715 3716Strain fitness (log2 ratio) -3 -2 -1 0 1at 3714.006 kb on + strandat 3714.097 kb on - strandat 3714.100 kb on - strandat 3715.190 kb on + strand, within NIAGMN_18800at 3715.486 kb on + strandat 3715.486 kb on + strandat 3715.541 kb on - strandat 3715.544 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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3,714,006 + -0.6
3,714,097 - +1.7
3,714,100 - +0.6
3,715,190 + NIAGMN_18800 0.58 -1.0
3,715,486 + +1.7
3,715,486 + +0.9
3,715,541 - -2.9
3,715,544 - +1.3

Or see this region's nucleotide sequence