Strain Fitness in Escherichia coli ECRC102 around NIAGMN_18790

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_18780 and NIAGMN_18785 overlap by 4 nucleotidesNIAGMN_18785 and NIAGMN_18790 overlap by 4 nucleotidesNIAGMN_18790 and NIAGMN_18795 are separated by 252 nucleotides NIAGMN_18780: NIAGMN_18780 - protein NinG, at 3,712,018 to 3,712,629 _18780 NIAGMN_18785: NIAGMN_18785 - Serine/threonine-protein phosphatase, at 3,712,626 to 3,713,291 _18785 NIAGMN_18790: NIAGMN_18790 - Antitermination protein Q, at 3,713,288 to 3,713,911 _18790 NIAGMN_18795: NIAGMN_18795 - Membrane protein, at 3,714,164 to 3,714,907 _18795 Position (kb) 3713 3714Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3713.439 kb on + strand, within NIAGMN_18790at 3713.439 kb on + strand, within NIAGMN_18790at 3713.440 kb on - strand, within NIAGMN_18790at 3713.492 kb on + strand, within NIAGMN_18790at 3713.493 kb on - strand, within NIAGMN_18790at 3713.493 kb on - strand, within NIAGMN_18790at 3713.493 kb on - strand, within NIAGMN_18790at 3713.557 kb on + strand, within NIAGMN_18790at 3713.571 kb on + strand, within NIAGMN_18790at 3713.606 kb on + strand, within NIAGMN_18790at 3713.674 kb on + strand, within NIAGMN_18790at 3713.675 kb on - strand, within NIAGMN_18790at 3713.676 kb on + strand, within NIAGMN_18790at 3713.677 kb on - strand, within NIAGMN_18790at 3713.700 kb on + strand, within NIAGMN_18790at 3713.700 kb on + strand, within NIAGMN_18790at 3713.728 kb on + strand, within NIAGMN_18790at 3713.787 kb on + strand, within NIAGMN_18790at 3713.938 kb on + strandat 3713.938 kb on + strandat 3713.939 kb on - strandat 3713.939 kb on - strandat 3713.939 kb on - strandat 3713.952 kb on + strandat 3714.006 kb on + strandat 3714.097 kb on - strandat 3714.100 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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3,713,439 + NIAGMN_18790 0.24 +0.7
3,713,439 + NIAGMN_18790 0.24 +0.9
3,713,440 - NIAGMN_18790 0.24 +1.6
3,713,492 + NIAGMN_18790 0.33 -0.3
3,713,493 - NIAGMN_18790 0.33 -0.5
3,713,493 - NIAGMN_18790 0.33 +1.5
3,713,493 - NIAGMN_18790 0.33 -3.3
3,713,557 + NIAGMN_18790 0.43 +2.1
3,713,571 + NIAGMN_18790 0.45 -0.2
3,713,606 + NIAGMN_18790 0.51 -0.7
3,713,674 + NIAGMN_18790 0.62 +1.5
3,713,675 - NIAGMN_18790 0.62 -0.4
3,713,676 + NIAGMN_18790 0.62 -2.5
3,713,677 - NIAGMN_18790 0.62 -1.6
3,713,700 + NIAGMN_18790 0.66 +0.0
3,713,700 + NIAGMN_18790 0.66 +0.6
3,713,728 + NIAGMN_18790 0.71 -1.3
3,713,787 + NIAGMN_18790 0.80 -0.9
3,713,938 + -1.5
3,713,938 + -2.9
3,713,939 - -0.9
3,713,939 - +0.4
3,713,939 - +1.3
3,713,952 + -0.3
3,714,006 + -0.6
3,714,097 - +1.7
3,714,100 - +0.6

Or see this region's nucleotide sequence