Strain Fitness in Escherichia coli ECRC102 around NIAGMN_18170

Experiment: L-Arabinose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Arabinose
3,596,444	+	cas3	NIAGMN_18165	0.69	-2.0
3,596,486	+	cas3	NIAGMN_18165	0.71	+0.6
3,596,604	-	cas3	NIAGMN_18165	0.75	-1.1
3,596,614	+	cas3	NIAGMN_18165	0.75	-0.6
3,596,718	-	cas3	NIAGMN_18165	0.79	-0.1
3,596,727	+	cas3	NIAGMN_18165	0.80	-1.2
3,596,727	+	cas3	NIAGMN_18165	0.80	-0.8
3,596,727	+	cas3	NIAGMN_18165	0.80	-0.9
3,596,727	+	cas3	NIAGMN_18165	0.80	-0.3
3,596,727	+	cas3	NIAGMN_18165	0.80	-2.8
3,596,727	+	cas3	NIAGMN_18165	0.80	-2.5
3,596,727	+	cas3	NIAGMN_18165	0.80	-0.8
3,596,727	+	cas3	NIAGMN_18165	0.80	+0.5
3,596,727	+	cas3	NIAGMN_18165	0.80	+1.1
3,596,727	+	cas3	NIAGMN_18165	0.80	+0.3
3,596,727	+	cas3	NIAGMN_18165	0.80	+2.7
3,596,727	+	cas3	NIAGMN_18165	0.80	-0.3
3,596,727	+	cas3	NIAGMN_18165	0.80	+1.9
3,596,727	+	cas3	NIAGMN_18165	0.80	+1.3
3,596,727	+	cas3	NIAGMN_18165	0.80	+1.7
3,596,728	-	cas3	NIAGMN_18165	0.80	-1.5
3,596,728	-	cas3	NIAGMN_18165	0.80	-0.1
3,596,728	-	cas3	NIAGMN_18165	0.80	-0.1
3,596,728	-	cas3	NIAGMN_18165	0.80	-2.4
3,596,728	-	cas3	NIAGMN_18165	0.80	-1.6
3,596,728	-	cas3	NIAGMN_18165	0.80	-0.4
3,596,728	-	cas3	NIAGMN_18165	0.80	+1.2
3,596,770	+	cas3	NIAGMN_18165	0.81	-2.2
3,596,771	-	cas3	NIAGMN_18165	0.81	+0.2
3,596,896	-	cas3	NIAGMN_18165	0.86	-1.0
3,596,896	-	cas3	NIAGMN_18165	0.86	+0.7
3,596,949	+	cas3	NIAGMN_18165	0.88	+0.6
3,596,970	+	cas3	NIAGMN_18165	0.89	-1.9
3,597,029	+				-0.1
3,597,057	+				+1.0
3,597,057	+				+1.0
3,597,281	+				+0.1
3,597,304	+				+0.5
3,597,311	+				+0.2
3,597,311	+				-0.3
3,597,371	+				-0.3
3,597,375	+				-1.6
3,597,375	+				-0.7
3,597,375	+				+1.9
3,597,375	+				-0.9
3,597,539	+	casA	NIAGMN_18170	0.10	+2.8
3,597,539	+	casA	NIAGMN_18170	0.10	-2.1
3,597,542	+	casA	NIAGMN_18170	0.11	-1.5
3,597,543	-	casA	NIAGMN_18170	0.11	-1.9
3,597,585	+	casA	NIAGMN_18170	0.13	+1.0
3,597,585	+	casA	NIAGMN_18170	0.13	-2.0
3,597,585	+	casA	NIAGMN_18170	0.13	+0.3
3,597,586	-	casA	NIAGMN_18170	0.13	+0.1
3,597,586	-	casA	NIAGMN_18170	0.13	+0.2
3,597,638	+	casA	NIAGMN_18170	0.17	+0.6
3,597,678	+	casA	NIAGMN_18170	0.19	-1.1
3,597,678	+	casA	NIAGMN_18170	0.19	-1.3
3,597,678	+	casA	NIAGMN_18170	0.19	+1.6
3,597,765	+	casA	NIAGMN_18170	0.25	-0.4
3,597,781	-	casA	NIAGMN_18170	0.26	-0.1
3,597,783	+	casA	NIAGMN_18170	0.26	-0.1
3,597,783	+	casA	NIAGMN_18170	0.26	-0.2
3,597,784	-	casA	NIAGMN_18170	0.26	+0.9
3,597,806	+	casA	NIAGMN_18170	0.28	+0.8
3,597,806	+	casA	NIAGMN_18170	0.28	+0.8
3,597,806	+	casA	NIAGMN_18170	0.28	+0.6
3,597,806	+	casA	NIAGMN_18170	0.28	+0.4
3,597,806	+	casA	NIAGMN_18170	0.28	-2.1
3,597,806	+	casA	NIAGMN_18170	0.28	-2.7
3,597,806	+	casA	NIAGMN_18170	0.28	+0.5
3,597,806	+	casA	NIAGMN_18170	0.28	-0.1
3,597,806	+	casA	NIAGMN_18170	0.28	+0.8
3,597,806	+	casA	NIAGMN_18170	0.28	-2.5
3,597,806	+	casA	NIAGMN_18170	0.28	-1.0
3,597,807	-	casA	NIAGMN_18170	0.28	+0.9
3,597,807	-	casA	NIAGMN_18170	0.28	-0.9
3,597,807	-	casA	NIAGMN_18170	0.28	-1.8
3,597,807	-	casA	NIAGMN_18170	0.28	-1.8
3,597,807	-	casA	NIAGMN_18170	0.28	+1.4
3,597,807	-	casA	NIAGMN_18170	0.28	-1.5
3,597,848	+	casA	NIAGMN_18170	0.30	-1.0
3,597,887	+	casA	NIAGMN_18170	0.33	-2.2
3,598,060	-	casA	NIAGMN_18170	0.44	-0.6
3,598,143	+	casA	NIAGMN_18170	0.49	+0.4
3,598,152	+	casA	NIAGMN_18170	0.50	-0.2
3,598,153	-	casA	NIAGMN_18170	0.50	-0.8
3,598,179	+	casA	NIAGMN_18170	0.51	+0.3
3,598,231	+	casA	NIAGMN_18170	0.55	-1.9
3,598,243	+	casA	NIAGMN_18170	0.55	+0.4
3,598,243	+	casA	NIAGMN_18170	0.55	-1.2
3,598,243	+	casA	NIAGMN_18170	0.55	+1.6
3,598,281	-	casA	NIAGMN_18170	0.58	+2.5
3,598,287	+	casA	NIAGMN_18170	0.58	+3.1
3,598,334	+	casA	NIAGMN_18170	0.61	+0.1
3,598,335	-	casA	NIAGMN_18170	0.61	-0.2
3,598,372	-	casA	NIAGMN_18170	0.64	+0.2
3,598,468	+	casA	NIAGMN_18170	0.70	-0.8
3,598,710	-	casA	NIAGMN_18170	0.85	-2.0
3,598,748	+	casA	NIAGMN_18170	0.88	-0.8
3,598,749	-	casA	NIAGMN_18170	0.88	+1.2
3,598,808	+				+0.2
3,598,809	-				+0.1
3,598,822	+				-0.1
3,598,822	+				+1.0
3,598,872	+				+0.4
3,599,028	-	casB	NIAGMN_18175	0.17	-2.4
3,599,030	+	casB	NIAGMN_18175	0.18	-1.4
3,599,092	+	casB	NIAGMN_18175	0.29	-1.2
3,599,092	+	casB	NIAGMN_18175	0.29	-0.1
3,599,120	+	casB	NIAGMN_18175	0.34	-0.9
3,599,120	+	casB	NIAGMN_18175	0.34	-0.7
3,599,293	+	casB	NIAGMN_18175	0.67	+0.8
3,599,293	+	casB	NIAGMN_18175	0.67	-1.0
3,599,294	-	casB	NIAGMN_18175	0.67	+1.4
3,599,406	-	casB	NIAGMN_18175	0.88	-0.9
3,599,430	+				-0.2
3,599,434	-				+0.5
3,599,478	-				+2.0
3,599,494	+				+2.3
3,599,495	-				+0.7
3,599,666	-	cas7e	NIAGMN_18180	0.17	+0.4
3,599,686	+	cas7e	NIAGMN_18180	0.19	-2.1
3,599,707	+	cas7e	NIAGMN_18180	0.21	-0.6
3,599,838	+	cas7e	NIAGMN_18180	0.34	-0.1
3,599,838	+	cas7e	NIAGMN_18180	0.34	+0.9
3,599,871	+	cas7e	NIAGMN_18180	0.37	+0.7