Strain Fitness in Escherichia coli ECRC102 around NIAGMN_17755

Experiment: L-Arabinose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Arabinose
3,507,208	-	tas	NIAGMN_17745	0.50	-2.6
3,507,294	+	tas	NIAGMN_17745	0.58	-0.9
3,507,294	+	tas	NIAGMN_17745	0.58	-0.4
3,507,295	-	tas	NIAGMN_17745	0.58	+0.4
3,507,295	-	tas	NIAGMN_17745	0.58	+0.7
3,507,295	-	tas	NIAGMN_17745	0.58	-0.0
3,507,295	-	tas	NIAGMN_17745	0.58	+0.0
3,507,450	+	tas	NIAGMN_17745	0.73	-2.3
3,507,488	-	tas	NIAGMN_17745	0.76	+2.4
3,507,488	-	tas	NIAGMN_17745	0.76	-1.5
3,507,530	+	tas	NIAGMN_17745	0.80	+0.1
3,507,530	+	tas	NIAGMN_17745	0.80	-2.2
3,507,530	+	tas	NIAGMN_17745	0.80	-0.4
3,507,531	-	tas	NIAGMN_17745	0.81	+0.1
3,507,531	-	tas	NIAGMN_17745	0.81	-0.6
3,507,595	-	tas	NIAGMN_17745	0.87	-0.8
3,507,717	+				+0.1
3,507,717	+				-0.1
3,507,717	+				+0.1
3,507,717	+				-0.5
3,507,718	-				+0.1
3,507,750	-				+2.7
3,507,760	+				+2.9
3,507,761	-				-1.3
3,507,761	-				-1.8
3,507,761	-				+1.5
3,507,761	-				+0.5
3,507,835	-				-0.9
3,507,908	-	ygdR	NIAGMN_17750	0.31	-2.9
3,507,989	-	ygdR	NIAGMN_17750	0.68	-2.1
3,508,039	-				+0.1
3,508,039	-				+2.9
3,508,083	+				-2.3
3,508,083	+				-2.5
3,508,083	+				+1.0
3,508,083	+				-1.8
3,508,083	+				+1.2
3,508,084	-				+0.3
3,508,084	-				-0.5
3,508,084	-				+3.3
3,508,084	-				+2.3
3,508,084	-				+0.6
3,508,084	-				+0.6
3,508,084	-				+0.7
3,508,084	-				-1.2
3,508,084	-				-0.0
3,508,091	+				+1.1
3,508,091	+				+0.5
3,508,091	+				+0.3
3,508,091	+				+1.1
3,508,092	-				+1.6
3,508,092	-				-2.6
3,508,100	+				-0.4
3,508,113	+				-1.2
3,508,113	+				-2.3
3,508,113	+				-0.3
3,508,113	+				-0.1
3,508,113	+				-1.1
3,508,113	+				-0.5
3,508,113	+				+1.5
3,508,113	+				+0.7
3,508,113	+				-1.2
3,508,114	-				+1.8
3,508,114	-				-1.2
3,508,114	-				+0.7
3,508,115	+				-0.7
3,508,115	+				+0.5
3,508,115	+				+2.9
3,508,115	+				+0.5
3,508,117	+				+1.4
3,508,117	+				+0.4
3,508,118	-				+0.9
3,508,118	-				+1.7
3,508,118	-				-1.6
3,508,165	+				+0.5
3,508,187	+				-2.3
3,508,188	-				+0.8
3,508,247	-				+0.9
3,508,267	-				-2.9
3,508,267	-				-1.1
3,508,272	+	ygdQ	NIAGMN_17755	0.11	-0.3
3,508,272	+	ygdQ	NIAGMN_17755	0.11	+1.0
3,508,272	+	ygdQ	NIAGMN_17755	0.11	-0.5
3,508,273	-	ygdQ	NIAGMN_17755	0.11	-0.3
3,508,284	-	ygdQ	NIAGMN_17755	0.12	-2.4
3,508,316	-	ygdQ	NIAGMN_17755	0.17	-2.4
3,508,441	+	ygdQ	NIAGMN_17755	0.34	+2.2
3,508,442	-	ygdQ	NIAGMN_17755	0.34	-0.0
3,508,442	-	ygdQ	NIAGMN_17755	0.34	-2.7
3,508,444	+	ygdQ	NIAGMN_17755	0.35	+0.9
3,508,444	+	ygdQ	NIAGMN_17755	0.35	-1.9
3,508,444	+	ygdQ	NIAGMN_17755	0.35	+1.1
3,508,444	+	ygdQ	NIAGMN_17755	0.35	-0.7
3,508,444	+	ygdQ	NIAGMN_17755	0.35	-0.2
3,508,444	+	ygdQ	NIAGMN_17755	0.35	-1.9
3,508,445	-	ygdQ	NIAGMN_17755	0.35	-0.8
3,508,445	-	ygdQ	NIAGMN_17755	0.35	+0.1
3,508,498	+	ygdQ	NIAGMN_17755	0.42	+0.4
3,508,499	-	ygdQ	NIAGMN_17755	0.42	+1.6
3,508,499	-	ygdQ	NIAGMN_17755	0.42	-0.9
3,508,499	-	ygdQ	NIAGMN_17755	0.42	-2.4
3,508,513	+	ygdQ	NIAGMN_17755	0.44	+0.2
3,508,514	-	ygdQ	NIAGMN_17755	0.45	-2.5
3,508,514	-	ygdQ	NIAGMN_17755	0.45	+2.4
3,508,613	-	ygdQ	NIAGMN_17755	0.58	+3.1
3,508,670	+	ygdQ	NIAGMN_17755	0.66	+0.6
3,508,671	-	ygdQ	NIAGMN_17755	0.67	+2.6
3,508,675	+	ygdQ	NIAGMN_17755	0.67	-1.3
3,508,675	+	ygdQ	NIAGMN_17755	0.67	+0.0
3,508,735	+	ygdQ	NIAGMN_17755	0.75	+0.6
3,508,820	-	ygdQ	NIAGMN_17755	0.87	+0.8
3,508,820	-	ygdQ	NIAGMN_17755	0.87	+1.1
3,508,823	-	ygdQ	NIAGMN_17755	0.88	-0.3
3,508,904	+				+1.5
3,508,912	-				-2.9
3,508,912	-				+2.6
3,508,912	-				+0.5
3,508,944	+				-1.1
3,508,944	+				-1.0
3,508,944	+				-1.5
3,508,944	+				-0.0
3,508,944	+				+0.6
3,508,945	-				+0.5
3,508,945	-				-0.0
3,508,945	-				+0.8
3,508,945	-				+0.2
3,508,945	-				-1.5
3,508,946	+				+0.8
3,508,946	+				-3.1
3,508,947	-				-0.0
3,509,033	+				-1.8
3,509,125	+	mutH	NIAGMN_17760	0.21	+0.3
3,509,125	+	mutH	NIAGMN_17760	0.21	-1.3
3,509,126	-	mutH	NIAGMN_17760	0.21	+1.8
3,509,129	+	mutH	NIAGMN_17760	0.22	-3.4
3,509,130	-	mutH	NIAGMN_17760	0.22	-2.2
3,509,130	-	mutH	NIAGMN_17760	0.22	-0.4
3,509,182	+	mutH	NIAGMN_17760	0.30	-0.5
3,509,186	-	mutH	NIAGMN_17760	0.30	-1.4
3,509,206	+	mutH	NIAGMN_17760	0.33	-0.5
3,509,207	-	mutH	NIAGMN_17760	0.33	+0.3
3,509,309	-	mutH	NIAGMN_17760	0.48	-1.0
3,509,428	-	mutH	NIAGMN_17760	0.65	-0.6
3,509,434	-	mutH	NIAGMN_17760	0.66	+1.0
3,509,472	+	mutH	NIAGMN_17760	0.72	-2.2
3,509,586	+	mutH	NIAGMN_17760	0.88	-0.0
3,509,586	+	mutH	NIAGMN_17760	0.88	+0.5
3,509,586	+	mutH	NIAGMN_17760	0.88	-1.8
3,509,586	+	mutH	NIAGMN_17760	0.88	+0.3
3,509,587	-	mutH	NIAGMN_17760	0.88	-0.5
3,509,587	-	mutH	NIAGMN_17760	0.88	+0.4
3,509,847	+				-1.7
3,509,848	-				+0.3
3,509,848	-				+0.5
3,509,848	-				+0.6
3,509,848	-				+0.8
3,509,848	-				+1.2
3,509,896	+	ygdT	NIAGMN_17765	0.29	+0.3
3,509,897	-	ygdT	NIAGMN_17765	0.30	+1.0
3,509,909	+	ygdT	NIAGMN_17765	0.38	-1.0
3,509,909	+	ygdT	NIAGMN_17765	0.38	-0.5