Strain Fitness in Escherichia coli ECRC102 around NIAGMN_17510

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_17500 and NIAGMN_17505 are separated by 66 nucleotidesNIAGMN_17505 and araC are separated by 345 nucleotidesaraC and sctC overlap by 4 nucleotides NIAGMN_17500: NIAGMN_17500 - Glyco-hydro-15 domain-containing protein, at 3,465,197 to 3,466,255 _17500 NIAGMN_17505: NIAGMN_17505 - GhoT/OrtT family toxin, at 3,466,322 to 3,466,501 _17505 NIAGMN_17510: araC - AraC family transcriptional regulator, at 3,466,847 to 3,467,596 araC NIAGMN_17515: sctC - type III secretion system outer membrane ring subunit SctC, at 3,467,593 to 3,469,296 sctC Position (kb) 3466 3467 3468Strain fitness (log2 ratio) -2 -1 0 1 2at 3466.723 kb on + strandat 3466.775 kb on - strandat 3467.331 kb on + strand, within araCat 3467.371 kb on - strand, within araCat 3467.399 kb on - strand, within araCat 3467.403 kb on - strand, within araCat 3467.766 kb on + strand, within sctCat 3468.021 kb on + strand, within sctCat 3468.234 kb on + strand, within sctCat 3468.424 kb on - strand, within sctCat 3468.533 kb on + strand, within sctC

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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3,466,723 + -0.1
3,466,775 - +1.9
3,467,331 + araC NIAGMN_17510 0.65 -1.5
3,467,371 - araC NIAGMN_17510 0.70 -0.4
3,467,399 - araC NIAGMN_17510 0.74 -1.8
3,467,403 - araC NIAGMN_17510 0.74 +0.2
3,467,766 + sctC NIAGMN_17515 0.10 +1.4
3,468,021 + sctC NIAGMN_17515 0.25 -2.4
3,468,234 + sctC NIAGMN_17515 0.38 +0.1
3,468,424 - sctC NIAGMN_17515 0.49 -0.4
3,468,533 + sctC NIAGMN_17515 0.55 -0.6

Or see this region's nucleotide sequence