Strain Fitness in Escherichia coli ECRC102 around NIAGMN_16435

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdnaG and rpsU are separated by 110 nucleotidesrpsU and tsaD are separated by 237 nucleotidestsaD and ttdT are separated by 42 nucleotides NIAGMN_16425: dnaG - DNA primase, at 3,249,346 to 3,251,091 dnaG NIAGMN_16430: rpsU - 30S ribosomal protein S21, at 3,251,202 to 3,251,417 rpsU NIAGMN_16435: tsaD - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD, at 3,251,655 to 3,252,668 tsaD NIAGMN_16440: ttdT - L-tartrate/succinate antiporter, at 3,252,711 to 3,254,174 ttdT Position (kb) 3251 3252 3253Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3251.092 kb on - strandat 3251.116 kb on - strandat 3251.547 kb on + strandat 3251.548 kb on - strandat 3251.548 kb on - strandat 3251.550 kb on - strandat 3251.562 kb on + strandat 3251.562 kb on + strandat 3251.562 kb on + strandat 3251.562 kb on + strandat 3251.563 kb on - strandat 3251.564 kb on + strandat 3251.564 kb on + strandat 3251.565 kb on - strandat 3251.565 kb on - strandat 3251.565 kb on - strandat 3251.565 kb on - strandat 3251.598 kb on + strandat 3251.598 kb on + strandat 3251.619 kb on + strandat 3251.631 kb on + strandat 3252.667 kb on - strandat 3252.673 kb on - strandat 3252.691 kb on - strandat 3252.691 kb on - strandat 3252.691 kb on - strandat 3252.691 kb on - strandat 3252.708 kb on + strandat 3252.708 kb on + strandat 3252.708 kb on + strandat 3252.709 kb on - strandat 3252.712 kb on + strandat 3252.713 kb on - strandat 3252.713 kb on - strandat 3252.713 kb on - strandat 3252.738 kb on + strandat 3252.738 kb on + strandat 3252.769 kb on - strandat 3252.800 kb on - strandat 3252.830 kb on - strandat 3252.832 kb on + strandat 3252.833 kb on - strandat 3252.833 kb on - strandat 3252.856 kb on + strandat 3252.856 kb on + strandat 3252.856 kb on + strandat 3252.857 kb on - strandat 3252.857 kb on - strandat 3252.857 kb on - strandat 3252.863 kb on + strand, within ttdTat 3252.863 kb on + strand, within ttdTat 3252.864 kb on - strand, within ttdTat 3252.864 kb on - strand, within ttdTat 3252.975 kb on - strand, within ttdTat 3252.976 kb on + strand, within ttdTat 3252.976 kb on + strand, within ttdTat 3252.976 kb on + strand, within ttdTat 3252.977 kb on - strand, within ttdTat 3252.977 kb on - strand, within ttdTat 3253.009 kb on - strand, within ttdTat 3253.012 kb on + strand, within ttdTat 3253.013 kb on - strand, within ttdTat 3253.062 kb on + strand, within ttdTat 3253.062 kb on + strand, within ttdTat 3253.095 kb on - strand, within ttdTat 3253.095 kb on - strand, within ttdTat 3253.095 kb on - strand, within ttdTat 3253.095 kb on - strand, within ttdTat 3253.097 kb on + strand, within ttdTat 3253.097 kb on + strand, within ttdTat 3253.098 kb on - strand, within ttdTat 3253.172 kb on + strand, within ttdTat 3253.176 kb on - strand, within ttdTat 3253.258 kb on + strand, within ttdTat 3253.258 kb on + strand, within ttdTat 3253.258 kb on + strand, within ttdTat 3253.258 kb on + strand, within ttdTat 3253.258 kb on + strand, within ttdTat 3253.259 kb on - strand, within ttdTat 3253.259 kb on - strand, within ttdTat 3253.293 kb on + strand, within ttdTat 3253.293 kb on + strand, within ttdTat 3253.411 kb on + strand, within ttdTat 3253.412 kb on - strand, within ttdTat 3253.412 kb on - strand, within ttdTat 3253.440 kb on + strand, within ttdTat 3253.440 kb on + strand, within ttdTat 3253.446 kb on - strand, within ttdTat 3253.446 kb on - strand, within ttdTat 3253.522 kb on - strand, within ttdTat 3253.533 kb on - strand, within ttdTat 3253.600 kb on + strand, within ttdTat 3253.600 kb on + strand, within ttdTat 3253.600 kb on + strand, within ttdTat 3253.601 kb on - strand, within ttdTat 3253.601 kb on - strand, within ttdTat 3253.601 kb on - strand, within ttdTat 3253.645 kb on + strand, within ttdTat 3253.645 kb on + strand, within ttdTat 3253.645 kb on + strand, within ttdTat 3253.646 kb on - strand, within ttdT

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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3,251,092 - -2.5
3,251,116 - -3.3
3,251,547 + -0.5
3,251,548 - -1.6
3,251,548 - -2.6
3,251,550 - -0.1
3,251,562 + -0.9
3,251,562 + -0.8
3,251,562 + -0.8
3,251,562 + -3.2
3,251,563 - +1.1
3,251,564 + -0.2
3,251,564 + -0.1
3,251,565 - +1.5
3,251,565 - -0.6
3,251,565 - -0.6
3,251,565 - -0.8
3,251,598 + -0.0
3,251,598 + +0.2
3,251,619 + -0.3
3,251,631 + -1.1
3,252,667 - -0.7
3,252,673 - +0.1
3,252,691 - +0.8
3,252,691 - -0.0
3,252,691 - +1.8
3,252,691 - -0.4
3,252,708 + -0.9
3,252,708 + +0.4
3,252,708 + -0.6
3,252,709 - -2.2
3,252,712 + -1.9
3,252,713 - +0.4
3,252,713 - -0.4
3,252,713 - -0.4
3,252,738 + -0.5
3,252,738 + -2.1
3,252,769 - +0.1
3,252,800 - -1.4
3,252,830 - -1.2
3,252,832 + +0.3
3,252,833 - +0.6
3,252,833 - -0.8
3,252,856 + +1.4
3,252,856 + -1.3
3,252,856 + +0.9
3,252,857 - -2.6
3,252,857 - -1.8
3,252,857 - +0.6
3,252,863 + ttdT NIAGMN_16440 0.10 +0.3
3,252,863 + ttdT NIAGMN_16440 0.10 +2.7
3,252,864 - ttdT NIAGMN_16440 0.10 -0.1
3,252,864 - ttdT NIAGMN_16440 0.10 -1.3
3,252,975 - ttdT NIAGMN_16440 0.18 +0.2
3,252,976 + ttdT NIAGMN_16440 0.18 +1.4
3,252,976 + ttdT NIAGMN_16440 0.18 +0.0
3,252,976 + ttdT NIAGMN_16440 0.18 +0.0
3,252,977 - ttdT NIAGMN_16440 0.18 -0.5
3,252,977 - ttdT NIAGMN_16440 0.18 +1.8
3,253,009 - ttdT NIAGMN_16440 0.20 -0.8
3,253,012 + ttdT NIAGMN_16440 0.21 +0.4
3,253,013 - ttdT NIAGMN_16440 0.21 -2.3
3,253,062 + ttdT NIAGMN_16440 0.24 -1.1
3,253,062 + ttdT NIAGMN_16440 0.24 +2.8
3,253,095 - ttdT NIAGMN_16440 0.26 -2.4
3,253,095 - ttdT NIAGMN_16440 0.26 +0.1
3,253,095 - ttdT NIAGMN_16440 0.26 -0.2
3,253,095 - ttdT NIAGMN_16440 0.26 -0.3
3,253,097 + ttdT NIAGMN_16440 0.26 +2.7
3,253,097 + ttdT NIAGMN_16440 0.26 -1.8
3,253,098 - ttdT NIAGMN_16440 0.26 +0.4
3,253,172 + ttdT NIAGMN_16440 0.31 -0.2
3,253,176 - ttdT NIAGMN_16440 0.32 -1.7
3,253,258 + ttdT NIAGMN_16440 0.37 -0.2
3,253,258 + ttdT NIAGMN_16440 0.37 +1.3
3,253,258 + ttdT NIAGMN_16440 0.37 -0.4
3,253,258 + ttdT NIAGMN_16440 0.37 +2.8
3,253,258 + ttdT NIAGMN_16440 0.37 +2.4
3,253,259 - ttdT NIAGMN_16440 0.37 +0.2
3,253,259 - ttdT NIAGMN_16440 0.37 -0.7
3,253,293 + ttdT NIAGMN_16440 0.40 -0.3
3,253,293 + ttdT NIAGMN_16440 0.40 +0.5
3,253,411 + ttdT NIAGMN_16440 0.48 +0.0
3,253,412 - ttdT NIAGMN_16440 0.48 -0.0
3,253,412 - ttdT NIAGMN_16440 0.48 +0.4
3,253,440 + ttdT NIAGMN_16440 0.50 +1.0
3,253,440 + ttdT NIAGMN_16440 0.50 +1.2
3,253,446 - ttdT NIAGMN_16440 0.50 +0.5
3,253,446 - ttdT NIAGMN_16440 0.50 +0.3
3,253,522 - ttdT NIAGMN_16440 0.55 +0.5
3,253,533 - ttdT NIAGMN_16440 0.56 -1.0
3,253,600 + ttdT NIAGMN_16440 0.61 +2.9
3,253,600 + ttdT NIAGMN_16440 0.61 -0.7
3,253,600 + ttdT NIAGMN_16440 0.61 -0.4
3,253,601 - ttdT NIAGMN_16440 0.61 -0.6
3,253,601 - ttdT NIAGMN_16440 0.61 -1.7
3,253,601 - ttdT NIAGMN_16440 0.61 +0.1
3,253,645 + ttdT NIAGMN_16440 0.64 -0.4
3,253,645 + ttdT NIAGMN_16440 0.64 -0.0
3,253,645 + ttdT NIAGMN_16440 0.64 +1.0
3,253,646 - ttdT NIAGMN_16440 0.64 +0.3

Or see this region's nucleotide sequence