Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nfeF and Ile2_trna are separated by 53 nucleotides Ile2_trna and mug are separated by 124 nucleotides mug and rpoD are separated by 78 nucleotides rpoD and dnaG are separated by 194 nucleotides
NIAGMN_16405: nfeF - NADPH-dependent ferric chelate reductase, at 3,245,707 to 3,246,471
nfeF
NIAGMN_16410: Ile2_trna - tRNA-Ile2(cat), at 3,246,525 to 3,246,600
_trna
NIAGMN_16415: mug - G/U mismatch-specific DNA glycosylase, at 3,246,725 to 3,247,231
mug
NIAGMN_16420: rpoD - RNA polymerase sigma factor RpoD, at 3,247,310 to 3,249,151
rpoD
NIAGMN_16425: dnaG - DNA primase, at 3,249,346 to 3,251,091
dnaG
Position (kb)
3247
3248
3249
3250 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3246.355 kb on + strand, within nfeF at 3246.355 kb on + strand, within nfeF at 3246.356 kb on - strand, within nfeF at 3246.356 kb on - strand, within nfeF at 3246.381 kb on + strand, within nfeF at 3246.425 kb on - strand at 3246.519 kb on + strand at 3246.520 kb on - strand at 3246.520 kb on - strand at 3246.520 kb on - strand at 3246.520 kb on - strand at 3246.520 kb on - strand at 3246.520 kb on - strand at 3246.520 kb on - strand at 3246.616 kb on - strand at 3246.616 kb on - strand at 3246.616 kb on - strand at 3246.620 kb on + strand at 3246.620 kb on + strand at 3246.620 kb on + strand at 3246.691 kb on - strand at 3246.710 kb on + strand at 3246.710 kb on + strand at 3246.711 kb on - strand at 3246.711 kb on - strand at 3246.720 kb on + strand at 3246.720 kb on + strand at 3246.721 kb on - strand at 3246.724 kb on + strand at 3246.724 kb on + strand at 3246.846 kb on + strand, within mug at 3246.847 kb on - strand, within mug at 3246.847 kb on - strand, within mug at 3246.848 kb on + strand, within mug at 3246.848 kb on + strand, within mug at 3246.849 kb on - strand, within mug at 3246.849 kb on - strand, within mug at 3246.978 kb on + strand, within mug at 3246.978 kb on + strand, within mug at 3247.058 kb on + strand, within mug at 3249.259 kb on - strand at 3249.273 kb on - strand at 3249.273 kb on - strand at 3249.273 kb on - strand at 3249.273 kb on - strand at 3249.275 kb on - strand at 3249.275 kb on - strand at 3249.275 kb on - strand at 3249.277 kb on - strand at 3249.277 kb on - strand at 3249.277 kb on - strand at 3249.335 kb on - strand at 3249.335 kb on - strand at 3249.335 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 3,246,355 + nfeF NIAGMN_16405 0.85 +2.9 3,246,355 + nfeF NIAGMN_16405 0.85 -1.7 3,246,356 - nfeF NIAGMN_16405 0.85 +1.3 3,246,356 - nfeF NIAGMN_16405 0.85 +0.6 3,246,381 + nfeF NIAGMN_16405 0.88 -0.0 3,246,425 - -0.0 3,246,519 + +0.6 3,246,520 - -0.0 3,246,520 - -1.3 3,246,520 - -0.2 3,246,520 - -0.2 3,246,520 - -0.7 3,246,520 - +0.6 3,246,520 - -1.3 3,246,616 - +1.0 3,246,616 - +0.4 3,246,616 - -1.8 3,246,620 + +1.6 3,246,620 + +0.9 3,246,620 + -2.2 3,246,691 - -0.5 3,246,710 + -1.3 3,246,710 + -0.5 3,246,711 - +0.2 3,246,711 - +0.1 3,246,720 + -2.5 3,246,720 + -1.1 3,246,721 - +3.0 3,246,724 + -2.1 3,246,724 + -0.7 3,246,846 + mug NIAGMN_16415 0.24 -1.9 3,246,847 - mug NIAGMN_16415 0.24 +1.2 3,246,847 - mug NIAGMN_16415 0.24 +0.5 3,246,848 + mug NIAGMN_16415 0.24 -0.2 3,246,848 + mug NIAGMN_16415 0.24 -1.7 3,246,849 - mug NIAGMN_16415 0.24 +3.1 3,246,849 - mug NIAGMN_16415 0.24 -1.6 3,246,978 + mug NIAGMN_16415 0.50 +0.1 3,246,978 + mug NIAGMN_16415 0.50 -2.4 3,247,058 + mug NIAGMN_16415 0.66 -3.0 3,249,259 - -1.6 3,249,273 - -1.9 3,249,273 - +0.4 3,249,273 - +0.1 3,249,273 - -1.0 3,249,275 - -0.5 3,249,275 - -0.4 3,249,275 - -0.8 3,249,277 - -2.7 3,249,277 - -1.5 3,249,277 - -1.4 3,249,335 - -0.2 3,249,335 - +0.8 3,249,335 - +1.2
Or see this region's nucleotide sequence