Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rpmG and NIAGMN_13395 are separated by 97 nucleotides NIAGMN_13395 and coaD are separated by 38 nucleotides coaD and waaA are separated by 7 nucleotides
NIAGMN_13390: rpmG - 50S ribosomal protein L33, at 2,646,456 to 2,646,623
rpmG
NIAGMN_13395: NIAGMN_13395 - Formamidopyrimidine-DNA glycosylase, at 2,646,721 to 2,647,530
_13395
NIAGMN_13400: coaD - pantetheine-phosphate adenylyltransferase, at 2,647,569 to 2,648,048
coaD
NIAGMN_13405: waaA - lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase, at 2,648,056 to 2,649,333
waaA
Position (kb)
2647
2648
2649 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2646.673 kb on - strand at 2646.688 kb on + strand at 2646.689 kb on - strand at 2646.689 kb on - strand at 2646.720 kb on + strand at 2646.720 kb on + strand at 2646.720 kb on + strand at 2646.720 kb on + strand at 2646.720 kb on + strand at 2646.720 kb on + strand at 2646.721 kb on - strand at 2646.721 kb on - strand at 2646.721 kb on - strand at 2646.721 kb on - strand at 2646.721 kb on - strand at 2646.721 kb on - strand at 2646.721 kb on - strand at 2646.721 kb on - strand at 2646.721 kb on - strand at 2646.721 kb on - strand at 2646.721 kb on - strand at 2646.761 kb on + strand at 2646.761 kb on + strand at 2646.844 kb on + strand, within NIAGMN_13395 at 2646.845 kb on - strand, within NIAGMN_13395 at 2646.845 kb on - strand, within NIAGMN_13395 at 2646.870 kb on + strand, within NIAGMN_13395 at 2646.871 kb on - strand, within NIAGMN_13395 at 2646.871 kb on - strand, within NIAGMN_13395 at 2646.871 kb on - strand, within NIAGMN_13395 at 2646.888 kb on + strand, within NIAGMN_13395 at 2646.888 kb on + strand, within NIAGMN_13395 at 2646.889 kb on - strand, within NIAGMN_13395 at 2646.892 kb on + strand, within NIAGMN_13395 at 2646.893 kb on - strand, within NIAGMN_13395 at 2646.893 kb on - strand, within NIAGMN_13395 at 2646.925 kb on - strand, within NIAGMN_13395 at 2646.935 kb on + strand, within NIAGMN_13395 at 2646.935 kb on + strand, within NIAGMN_13395 at 2646.935 kb on + strand, within NIAGMN_13395 at 2646.935 kb on + strand, within NIAGMN_13395 at 2646.936 kb on - strand, within NIAGMN_13395 at 2646.936 kb on - strand, within NIAGMN_13395 at 2647.034 kb on - strand, within NIAGMN_13395 at 2647.090 kb on - strand, within NIAGMN_13395 at 2647.090 kb on - strand, within NIAGMN_13395 at 2647.090 kb on - strand, within NIAGMN_13395 at 2647.090 kb on - strand, within NIAGMN_13395 at 2647.090 kb on - strand, within NIAGMN_13395 at 2647.144 kb on + strand, within NIAGMN_13395 at 2647.144 kb on + strand, within NIAGMN_13395 at 2647.145 kb on - strand, within NIAGMN_13395 at 2647.182 kb on + strand, within NIAGMN_13395 at 2647.182 kb on + strand, within NIAGMN_13395 at 2647.227 kb on + strand, within NIAGMN_13395 at 2647.227 kb on + strand, within NIAGMN_13395 at 2647.227 kb on + strand, within NIAGMN_13395 at 2647.227 kb on + strand, within NIAGMN_13395 at 2647.228 kb on - strand, within NIAGMN_13395 at 2647.228 kb on - strand, within NIAGMN_13395 at 2647.228 kb on - strand, within NIAGMN_13395 at 2647.228 kb on - strand, within NIAGMN_13395 at 2647.231 kb on + strand, within NIAGMN_13395 at 2647.231 kb on + strand, within NIAGMN_13395 at 2647.231 kb on + strand, within NIAGMN_13395 at 2647.231 kb on + strand, within NIAGMN_13395 at 2647.231 kb on + strand, within NIAGMN_13395 at 2647.232 kb on - strand, within NIAGMN_13395 at 2647.232 kb on - strand, within NIAGMN_13395 at 2647.232 kb on - strand, within NIAGMN_13395 at 2647.313 kb on + strand, within NIAGMN_13395 at 2647.314 kb on - strand, within NIAGMN_13395 at 2647.362 kb on + strand, within NIAGMN_13395 at 2647.362 kb on + strand, within NIAGMN_13395 at 2647.362 kb on + strand, within NIAGMN_13395 at 2647.362 kb on + strand, within NIAGMN_13395 at 2647.362 kb on + strand, within NIAGMN_13395 at 2647.363 kb on - strand, within NIAGMN_13395 at 2647.363 kb on - strand, within NIAGMN_13395 at 2647.396 kb on - strand, within NIAGMN_13395 at 2647.396 kb on - strand, within NIAGMN_13395 at 2647.396 kb on - strand, within NIAGMN_13395 at 2647.406 kb on - strand, within NIAGMN_13395 at 2647.429 kb on + strand, within NIAGMN_13395 at 2647.429 kb on + strand, within NIAGMN_13395 at 2647.482 kb on + strand at 2647.482 kb on + strand at 2647.507 kb on + strand at 2647.508 kb on - strand at 2647.528 kb on + strand at 2647.528 kb on + strand at 2647.528 kb on + strand at 2647.528 kb on + strand at 2647.528 kb on + strand at 2647.529 kb on - strand at 2647.529 kb on - strand at 2647.551 kb on + strand at 2647.551 kb on + strand at 2647.551 kb on + strand at 2647.552 kb on - strand at 2647.552 kb on - strand at 2647.570 kb on + strand at 2647.576 kb on - strand at 2647.576 kb on - strand at 2648.079 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 2,646,673 - -1.6 2,646,688 + +1.7 2,646,689 - +0.6 2,646,689 - +0.5 2,646,720 + +2.2 2,646,720 + -0.4 2,646,720 + +1.6 2,646,720 + +0.1 2,646,720 + -1.0 2,646,720 + -1.1 2,646,721 - +2.3 2,646,721 - -1.5 2,646,721 - +1.6 2,646,721 - +2.0 2,646,721 - -1.3 2,646,721 - -0.3 2,646,721 - +1.1 2,646,721 - +1.0 2,646,721 - +2.0 2,646,721 - -2.6 2,646,721 - +0.1 2,646,761 + +1.0 2,646,761 + -0.5 2,646,844 + NIAGMN_13395 0.15 +1.7 2,646,845 - NIAGMN_13395 0.15 +0.3 2,646,845 - NIAGMN_13395 0.15 +0.9 2,646,870 + NIAGMN_13395 0.18 +0.1 2,646,871 - NIAGMN_13395 0.19 +0.2 2,646,871 - NIAGMN_13395 0.19 +0.1 2,646,871 - NIAGMN_13395 0.19 +1.1 2,646,888 + NIAGMN_13395 0.21 +0.8 2,646,888 + NIAGMN_13395 0.21 +0.9 2,646,889 - NIAGMN_13395 0.21 +1.0 2,646,892 + NIAGMN_13395 0.21 -2.4 2,646,893 - NIAGMN_13395 0.21 -1.4 2,646,893 - NIAGMN_13395 0.21 +0.1 2,646,925 - NIAGMN_13395 0.25 -0.1 2,646,935 + NIAGMN_13395 0.26 +0.9 2,646,935 + NIAGMN_13395 0.26 +0.8 2,646,935 + NIAGMN_13395 0.26 +0.4 2,646,935 + NIAGMN_13395 0.26 +0.4 2,646,936 - NIAGMN_13395 0.27 +1.1 2,646,936 - NIAGMN_13395 0.27 +0.0 2,647,034 - NIAGMN_13395 0.39 +2.9 2,647,090 - NIAGMN_13395 0.46 -1.0 2,647,090 - NIAGMN_13395 0.46 -1.9 2,647,090 - NIAGMN_13395 0.46 -2.0 2,647,090 - NIAGMN_13395 0.46 +0.4 2,647,090 - NIAGMN_13395 0.46 -1.4 2,647,144 + NIAGMN_13395 0.52 +1.4 2,647,144 + NIAGMN_13395 0.52 +0.2 2,647,145 - NIAGMN_13395 0.52 -1.4 2,647,182 + NIAGMN_13395 0.57 +1.2 2,647,182 + NIAGMN_13395 0.57 +0.1 2,647,227 + NIAGMN_13395 0.62 -2.6 2,647,227 + NIAGMN_13395 0.62 -0.5 2,647,227 + NIAGMN_13395 0.62 -0.0 2,647,227 + NIAGMN_13395 0.62 -0.3 2,647,228 - NIAGMN_13395 0.63 -0.6 2,647,228 - NIAGMN_13395 0.63 -1.4 2,647,228 - NIAGMN_13395 0.63 -1.6 2,647,228 - NIAGMN_13395 0.63 -1.9 2,647,231 + NIAGMN_13395 0.63 +0.7 2,647,231 + NIAGMN_13395 0.63 +0.2 2,647,231 + NIAGMN_13395 0.63 -0.8 2,647,231 + NIAGMN_13395 0.63 -0.0 2,647,231 + NIAGMN_13395 0.63 +0.3 2,647,232 - NIAGMN_13395 0.63 -0.8 2,647,232 - NIAGMN_13395 0.63 +0.7 2,647,232 - NIAGMN_13395 0.63 +1.2 2,647,313 + NIAGMN_13395 0.73 -0.2 2,647,314 - NIAGMN_13395 0.73 -2.0 2,647,362 + NIAGMN_13395 0.79 +0.6 2,647,362 + NIAGMN_13395 0.79 -0.2 2,647,362 + NIAGMN_13395 0.79 -0.9 2,647,362 + NIAGMN_13395 0.79 -0.3 2,647,362 + NIAGMN_13395 0.79 +2.1 2,647,363 - NIAGMN_13395 0.79 -0.2 2,647,363 - NIAGMN_13395 0.79 +0.4 2,647,396 - NIAGMN_13395 0.83 -0.9 2,647,396 - NIAGMN_13395 0.83 +0.2 2,647,396 - NIAGMN_13395 0.83 -0.1 2,647,406 - NIAGMN_13395 0.85 +0.8 2,647,429 + NIAGMN_13395 0.87 +0.1 2,647,429 + NIAGMN_13395 0.87 -0.2 2,647,482 + -1.0 2,647,482 + +0.7 2,647,507 + -0.1 2,647,508 - -1.3 2,647,528 + -0.6 2,647,528 + +0.1 2,647,528 + -0.1 2,647,528 + -0.5 2,647,528 + +2.7 2,647,529 - -1.4 2,647,529 - -0.3 2,647,551 + +0.5 2,647,551 + -0.2 2,647,551 + -2.9 2,647,552 - +1.3 2,647,552 - +0.4 2,647,570 + -1.3 2,647,576 - -0.2 2,647,576 - -0.3 2,648,079 - -1.1
Or see this region's nucleotide sequence