Strain Fitness in Escherichia coli ECRC102 around NIAGMN_12745

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_12740 and yidC are separated by 105 nucleotidesyidC and rnpA are separated by 223 nucleotidesrnpA and rpmH are separated by 49 nucleotidesrpmH and ysdD are separated by 229 nucleotides NIAGMN_12740: NIAGMN_12740 - tRNA modification GTPase MnmE, at 2,527,307 to 2,528,671 _12740 NIAGMN_12745: yidC - membrane protein insertase YidC, at 2,528,777 to 2,530,423 yidC NIAGMN_12750: rnpA - ribonuclease P protein component, at 2,530,647 to 2,530,973 rnpA NIAGMN_12755: rpmH - 50S ribosomal protein L34, at 2,531,023 to 2,531,163 rpmH NIAGMN_12760: ysdD - Protein YsdD, at 2,531,393 to 2,531,473 ysdD Position (kb) 2528 2529 2530 2531Strain fitness (log2 ratio) -1 0 1 2 3at 2528.653 kb on + strandat 2528.755 kb on - strandat 2528.856 kb on - strandat 2530.566 kb on - strandat 2530.628 kb on + strandat 2531.310 kb on + strandat 2531.395 kb on - strandat 2531.395 kb on - strandat 2531.397 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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2,528,653 + -1.2
2,528,755 - +1.2
2,528,856 - -1.7
2,530,566 - +0.4
2,530,628 + -0.7
2,531,310 + -0.5
2,531,395 - +2.8
2,531,395 - +1.2
2,531,397 - +2.4

Or see this region's nucleotide sequence