Strain Fitness in Escherichia coli ECRC102 around NIAGMN_07985

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntaccA and dnaE are separated by 12 nucleotidesdnaE and rnhB are separated by 36 nucleotidesrnhB and lpxB overlap by 4 nucleotides NIAGMN_07980: accA - acetyl-CoA carboxylase carboxyl transferase subunit alpha, at 1,529,121 to 1,530,080 accA NIAGMN_07985: dnaE - DNA polymerase III subunit alpha, at 1,530,093 to 1,533,575 dnaE NIAGMN_07990: rnhB - ribonuclease HII, at 1,533,612 to 1,534,208 rnhB NIAGMN_07995: lpxB - lipid-A-disaccharide synthase, at 1,534,205 to 1,535,353 lpxB Position (kb) 1530 1531 1532 1533 1534Strain fitness (log2 ratio) -1 0 1 2 3at 1529.135 kb on - strandat 1529.135 kb on - strandat 1533.899 kb on - strand, within rnhBat 1533.912 kb on - strand, within rnhBat 1533.958 kb on - strand, within rnhB

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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1,529,135 - +1.0
1,529,135 - -0.9
1,533,899 - rnhB NIAGMN_07990 0.48 -0.5
1,533,912 - rnhB NIAGMN_07990 0.50 +3.4
1,533,958 - rnhB NIAGMN_07990 0.58 +0.4

Or see this region's nucleotide sequence