Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rnhA and yafS overlap by 4 nucleotides yafS and gloB are separated by 33 nucleotides gloB and mltD are separated by 209 nucleotides
NIAGMN_07820: rnhA - ribonuclease HI, at 1,502,492 to 1,502,959
rnhA
NIAGMN_07825: yafS - Uncharacterized protein YafS, at 1,502,956 to 1,503,678
yafS
NIAGMN_07830: gloB - hydroxyacylglutathione hydrolase, at 1,503,712 to 1,504,467
gloB
NIAGMN_07835: mltD - murein transglycosylase D, at 1,504,677 to 1,505,897
mltD
Position (kb) 1503
1504
1505 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 1502.935 kb on + strand at 1502.935 kb on + strand at 1502.958 kb on - strand at 1502.970 kb on + strand at 1502.971 kb on - strand at 1503.040 kb on + strand, within yafS at 1503.054 kb on + strand, within yafS at 1503.055 kb on - strand, within yafS at 1503.075 kb on + strand, within yafS at 1503.075 kb on + strand, within yafS at 1503.075 kb on + strand, within yafS at 1503.075 kb on + strand, within yafS at 1503.076 kb on - strand, within yafS at 1503.082 kb on + strand, within yafS at 1503.082 kb on + strand, within yafS at 1503.082 kb on + strand, within yafS at 1503.082 kb on + strand, within yafS at 1503.082 kb on + strand, within yafS at 1503.083 kb on - strand, within yafS at 1503.083 kb on - strand, within yafS at 1503.083 kb on - strand, within yafS at 1503.102 kb on + strand, within yafS at 1503.103 kb on - strand, within yafS at 1503.167 kb on - strand, within yafS at 1503.167 kb on - strand, within yafS at 1503.231 kb on + strand, within yafS at 1503.232 kb on - strand, within yafS at 1503.234 kb on - strand, within yafS at 1503.253 kb on + strand, within yafS at 1503.286 kb on - strand, within yafS at 1503.286 kb on - strand, within yafS at 1503.353 kb on - strand, within yafS at 1503.353 kb on - strand, within yafS at 1503.384 kb on + strand, within yafS at 1503.384 kb on + strand, within yafS at 1503.384 kb on + strand, within yafS at 1503.384 kb on + strand, within yafS at 1503.384 kb on + strand, within yafS at 1503.384 kb on + strand, within yafS at 1503.384 kb on + strand, within yafS at 1503.385 kb on - strand, within yafS at 1503.385 kb on - strand, within yafS at 1503.385 kb on - strand, within yafS at 1503.385 kb on - strand, within yafS at 1503.385 kb on - strand, within yafS at 1503.385 kb on - strand, within yafS at 1503.385 kb on - strand, within yafS at 1503.385 kb on - strand, within yafS at 1503.385 kb on - strand, within yafS at 1503.385 kb on - strand, within yafS at 1503.385 kb on - strand, within yafS at 1503.385 kb on - strand, within yafS at 1503.385 kb on - strand, within yafS at 1503.385 kb on - strand, within yafS at 1503.394 kb on + strand, within yafS at 1503.526 kb on + strand, within yafS at 1503.541 kb on - strand, within yafS at 1503.549 kb on - strand, within yafS at 1503.565 kb on - strand, within yafS at 1503.707 kb on - strand at 1503.707 kb on - strand at 1503.707 kb on - strand at 1503.707 kb on - strand at 1503.711 kb on + strand at 1503.712 kb on - strand at 1503.712 kb on - strand at 1503.721 kb on - strand at 1503.721 kb on - strand at 1503.726 kb on + strand at 1503.748 kb on + strand at 1503.748 kb on + strand at 1503.748 kb on + strand at 1503.748 kb on + strand at 1503.748 kb on + strand at 1503.748 kb on + strand at 1503.748 kb on + strand at 1503.749 kb on - strand at 1503.749 kb on - strand at 1503.749 kb on - strand at 1503.815 kb on + strand, within gloB at 1503.818 kb on + strand, within gloB at 1503.819 kb on - strand, within gloB at 1503.819 kb on - strand, within gloB at 1503.837 kb on + strand, within gloB at 1503.857 kb on + strand, within gloB at 1503.858 kb on - strand, within gloB at 1503.858 kb on - strand, within gloB at 1503.858 kb on - strand, within gloB at 1503.896 kb on + strand, within gloB at 1503.934 kb on + strand, within gloB at 1503.934 kb on + strand, within gloB at 1503.934 kb on + strand, within gloB at 1503.934 kb on + strand, within gloB at 1503.934 kb on + strand, within gloB at 1503.934 kb on + strand, within gloB at 1503.935 kb on - strand, within gloB at 1503.935 kb on - strand, within gloB at 1504.022 kb on + strand, within gloB at 1504.047 kb on - strand, within gloB at 1504.185 kb on + strand, within gloB at 1504.193 kb on + strand, within gloB at 1504.212 kb on + strand, within gloB at 1504.212 kb on + strand, within gloB at 1504.212 kb on + strand, within gloB at 1504.212 kb on + strand, within gloB at 1504.213 kb on - strand, within gloB at 1504.243 kb on - strand, within gloB at 1504.273 kb on + strand, within gloB at 1504.274 kb on - strand, within gloB at 1504.313 kb on + strand, within gloB at 1504.459 kb on - strand at 1504.518 kb on + strand at 1504.518 kb on + strand at 1504.518 kb on + strand at 1504.526 kb on + strand at 1504.555 kb on + strand at 1504.659 kb on - strand at 1504.799 kb on + strand, within mltD at 1504.806 kb on + strand, within mltD at 1504.806 kb on + strand, within mltD at 1504.819 kb on + strand, within mltD at 1504.819 kb on + strand, within mltD at 1504.819 kb on + strand, within mltD at 1504.839 kb on + strand, within mltD at 1504.841 kb on + strand, within mltD at 1504.841 kb on + strand, within mltD at 1504.841 kb on + strand, within mltD at 1504.841 kb on + strand, within mltD at 1504.841 kb on + strand, within mltD at 1504.841 kb on + strand, within mltD at 1504.845 kb on + strand, within mltD at 1504.845 kb on + strand, within mltD at 1504.845 kb on + strand, within mltD at 1504.845 kb on + strand, within mltD at 1504.846 kb on - strand, within mltD at 1504.874 kb on + strand, within mltD at 1504.894 kb on + strand, within mltD at 1504.897 kb on + strand, within mltD at 1504.897 kb on + strand, within mltD at 1504.897 kb on + strand, within mltD at 1504.897 kb on + strand, within mltD at 1504.897 kb on + strand, within mltD at 1504.897 kb on + strand, within mltD at 1504.897 kb on + strand, within mltD at 1504.900 kb on + strand, within mltD at 1504.900 kb on + strand, within mltD at 1505.121 kb on + strand, within mltD at 1505.121 kb on + strand, within mltD at 1505.121 kb on + strand, within mltD at 1505.123 kb on + strand, within mltD at 1505.156 kb on + strand, within mltD at 1505.156 kb on + strand, within mltD at 1505.226 kb on + strand, within mltD at 1505.226 kb on + strand, within mltD at 1505.227 kb on - strand, within mltD at 1505.278 kb on - strand, within mltD at 1505.284 kb on + strand, within mltD at 1505.284 kb on + strand, within mltD at 1505.284 kb on + strand, within mltD at 1505.284 kb on + strand, within mltD at 1505.366 kb on + strand, within mltD at 1505.448 kb on + strand, within mltD
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 1,502,935 + +0.9 1,502,935 + +2.4 1,502,958 - -0.1 1,502,970 + +0.1 1,502,971 - -0.7 1,503,040 + yafS NIAGMN_07825 0.12 +1.1 1,503,054 + yafS NIAGMN_07825 0.14 -3.0 1,503,055 - yafS NIAGMN_07825 0.14 -3.9 1,503,075 + yafS NIAGMN_07825 0.16 +0.3 1,503,075 + yafS NIAGMN_07825 0.16 -1.2 1,503,075 + yafS NIAGMN_07825 0.16 -2.8 1,503,075 + yafS NIAGMN_07825 0.16 -1.3 1,503,076 - yafS NIAGMN_07825 0.17 -0.3 1,503,082 + yafS NIAGMN_07825 0.17 +0.1 1,503,082 + yafS NIAGMN_07825 0.17 +0.3 1,503,082 + yafS NIAGMN_07825 0.17 -0.1 1,503,082 + yafS NIAGMN_07825 0.17 -1.0 1,503,082 + yafS NIAGMN_07825 0.17 -1.8 1,503,083 - yafS NIAGMN_07825 0.18 -1.5 1,503,083 - yafS NIAGMN_07825 0.18 +0.6 1,503,083 - yafS NIAGMN_07825 0.18 +2.5 1,503,102 + yafS NIAGMN_07825 0.20 -0.3 1,503,103 - yafS NIAGMN_07825 0.20 -2.5 1,503,167 - yafS NIAGMN_07825 0.29 +0.0 1,503,167 - yafS NIAGMN_07825 0.29 -0.5 1,503,231 + yafS NIAGMN_07825 0.38 +2.3 1,503,232 - yafS NIAGMN_07825 0.38 +1.2 1,503,234 - yafS NIAGMN_07825 0.38 +0.2 1,503,253 + yafS NIAGMN_07825 0.41 +1.9 1,503,286 - yafS NIAGMN_07825 0.46 -0.3 1,503,286 - yafS NIAGMN_07825 0.46 +0.3 1,503,353 - yafS NIAGMN_07825 0.55 -2.6 1,503,353 - yafS NIAGMN_07825 0.55 -0.3 1,503,384 + yafS NIAGMN_07825 0.59 -0.7 1,503,384 + yafS NIAGMN_07825 0.59 +1.3 1,503,384 + yafS NIAGMN_07825 0.59 -0.8 1,503,384 + yafS NIAGMN_07825 0.59 -2.2 1,503,384 + yafS NIAGMN_07825 0.59 -0.2 1,503,384 + yafS NIAGMN_07825 0.59 -1.3 1,503,384 + yafS NIAGMN_07825 0.59 -1.0 1,503,385 - yafS NIAGMN_07825 0.59 +2.9 1,503,385 - yafS NIAGMN_07825 0.59 +0.1 1,503,385 - yafS NIAGMN_07825 0.59 -1.0 1,503,385 - yafS NIAGMN_07825 0.59 +0.3 1,503,385 - yafS NIAGMN_07825 0.59 -1.0 1,503,385 - yafS NIAGMN_07825 0.59 -0.6 1,503,385 - yafS NIAGMN_07825 0.59 -1.5 1,503,385 - yafS NIAGMN_07825 0.59 -0.6 1,503,385 - yafS NIAGMN_07825 0.59 -3.2 1,503,385 - yafS NIAGMN_07825 0.59 +0.9 1,503,385 - yafS NIAGMN_07825 0.59 -3.0 1,503,385 - yafS NIAGMN_07825 0.59 +0.9 1,503,385 - yafS NIAGMN_07825 0.59 -1.2 1,503,385 - yafS NIAGMN_07825 0.59 +0.3 1,503,394 + yafS NIAGMN_07825 0.61 -1.3 1,503,526 + yafS NIAGMN_07825 0.79 +0.4 1,503,541 - yafS NIAGMN_07825 0.81 -0.7 1,503,549 - yafS NIAGMN_07825 0.82 -4.0 1,503,565 - yafS NIAGMN_07825 0.84 +1.1 1,503,707 - -1.0 1,503,707 - -0.8 1,503,707 - +0.3 1,503,707 - -2.4 1,503,711 + -2.3 1,503,712 - -0.9 1,503,712 - +0.3 1,503,721 - -0.7 1,503,721 - +1.4 1,503,726 + +1.3 1,503,748 + +0.9 1,503,748 + +0.8 1,503,748 + -1.6 1,503,748 + +0.1 1,503,748 + -3.3 1,503,748 + -2.3 1,503,748 + -0.4 1,503,749 - -0.1 1,503,749 - +0.3 1,503,749 - -0.2 1,503,815 + gloB NIAGMN_07830 0.14 -0.2 1,503,818 + gloB NIAGMN_07830 0.14 +2.9 1,503,819 - gloB NIAGMN_07830 0.14 -0.4 1,503,819 - gloB NIAGMN_07830 0.14 -0.6 1,503,837 + gloB NIAGMN_07830 0.17 +0.6 1,503,857 + gloB NIAGMN_07830 0.19 -0.4 1,503,858 - gloB NIAGMN_07830 0.19 -0.2 1,503,858 - gloB NIAGMN_07830 0.19 +0.8 1,503,858 - gloB NIAGMN_07830 0.19 -1.3 1,503,896 + gloB NIAGMN_07830 0.24 -0.1 1,503,934 + gloB NIAGMN_07830 0.29 -1.1 1,503,934 + gloB NIAGMN_07830 0.29 +1.3 1,503,934 + gloB NIAGMN_07830 0.29 -2.0 1,503,934 + gloB NIAGMN_07830 0.29 +0.2 1,503,934 + gloB NIAGMN_07830 0.29 -1.7 1,503,934 + gloB NIAGMN_07830 0.29 -2.4 1,503,935 - gloB NIAGMN_07830 0.29 +2.9 1,503,935 - gloB NIAGMN_07830 0.29 -2.0 1,504,022 + gloB NIAGMN_07830 0.41 -1.7 1,504,047 - gloB NIAGMN_07830 0.44 +1.0 1,504,185 + gloB NIAGMN_07830 0.63 +2.6 1,504,193 + gloB NIAGMN_07830 0.64 -1.1 1,504,212 + gloB NIAGMN_07830 0.66 -0.9 1,504,212 + gloB NIAGMN_07830 0.66 +0.5 1,504,212 + gloB NIAGMN_07830 0.66 -1.6 1,504,212 + gloB NIAGMN_07830 0.66 -0.1 1,504,213 - gloB NIAGMN_07830 0.66 +0.9 1,504,243 - gloB NIAGMN_07830 0.70 -0.9 1,504,273 + gloB NIAGMN_07830 0.74 +0.9 1,504,274 - gloB NIAGMN_07830 0.74 -0.7 1,504,313 + gloB NIAGMN_07830 0.79 +1.3 1,504,459 - +0.3 1,504,518 + -0.4 1,504,518 + +0.4 1,504,518 + +1.1 1,504,526 + +0.5 1,504,555 + -1.5 1,504,659 - +2.3 1,504,799 + mltD NIAGMN_07835 0.10 +0.5 1,504,806 + mltD NIAGMN_07835 0.11 +2.9 1,504,806 + mltD NIAGMN_07835 0.11 -0.5 1,504,819 + mltD NIAGMN_07835 0.12 +0.3 1,504,819 + mltD NIAGMN_07835 0.12 +0.4 1,504,819 + mltD NIAGMN_07835 0.12 +0.7 1,504,839 + mltD NIAGMN_07835 0.13 -0.5 1,504,841 + mltD NIAGMN_07835 0.13 -1.4 1,504,841 + mltD NIAGMN_07835 0.13 +1.2 1,504,841 + mltD NIAGMN_07835 0.13 -1.8 1,504,841 + mltD NIAGMN_07835 0.13 -1.2 1,504,841 + mltD NIAGMN_07835 0.13 +0.8 1,504,841 + mltD NIAGMN_07835 0.13 -0.9 1,504,845 + mltD NIAGMN_07835 0.14 +1.5 1,504,845 + mltD NIAGMN_07835 0.14 -0.2 1,504,845 + mltD NIAGMN_07835 0.14 -0.6 1,504,845 + mltD NIAGMN_07835 0.14 +0.5 1,504,846 - mltD NIAGMN_07835 0.14 +0.7 1,504,874 + mltD NIAGMN_07835 0.16 -0.5 1,504,894 + mltD NIAGMN_07835 0.18 +0.1 1,504,897 + mltD NIAGMN_07835 0.18 +0.7 1,504,897 + mltD NIAGMN_07835 0.18 +0.0 1,504,897 + mltD NIAGMN_07835 0.18 -1.0 1,504,897 + mltD NIAGMN_07835 0.18 -0.9 1,504,897 + mltD NIAGMN_07835 0.18 -2.0 1,504,897 + mltD NIAGMN_07835 0.18 -1.8 1,504,897 + mltD NIAGMN_07835 0.18 -1.8 1,504,900 + mltD NIAGMN_07835 0.18 +0.2 1,504,900 + mltD NIAGMN_07835 0.18 -0.7 1,505,121 + mltD NIAGMN_07835 0.36 +0.3 1,505,121 + mltD NIAGMN_07835 0.36 +1.6 1,505,121 + mltD NIAGMN_07835 0.36 +0.1 1,505,123 + mltD NIAGMN_07835 0.37 -0.1 1,505,156 + mltD NIAGMN_07835 0.39 -2.8 1,505,156 + mltD NIAGMN_07835 0.39 -1.9 1,505,226 + mltD NIAGMN_07835 0.45 -0.3 1,505,226 + mltD NIAGMN_07835 0.45 -1.0 1,505,227 - mltD NIAGMN_07835 0.45 -2.7 1,505,278 - mltD NIAGMN_07835 0.49 -2.2 1,505,284 + mltD NIAGMN_07835 0.50 -0.3 1,505,284 + mltD NIAGMN_07835 0.50 -0.2 1,505,284 + mltD NIAGMN_07835 0.50 +1.4 1,505,284 + mltD NIAGMN_07835 0.50 +0.8 1,505,366 + mltD NIAGMN_07835 0.56 -2.3 1,505,448 + mltD NIAGMN_07835 0.63 -1.7
Or see this region's nucleotide sequence