Strain Fitness in Escherichia coli ECRC102 around NIAGMN_05400

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntholA and nadD are separated by 1 nucleotidesnadD and cobC are separated by 23 nucleotidescobC and rsfS are separated by 259 nucleotides NIAGMN_05395: holA - DNA polymerase III subunit delta, at 988,077 to 989,108 holA NIAGMN_05400: nadD - nicotinate-nucleotide adenylyltransferase, at 989,110 to 989,751 nadD NIAGMN_05405: cobC - adenosylcobalamin/alpha-ribazole phosphatase, at 989,775 to 990,386 cobC NIAGMN_05410: rsfS - ribosome silencing factor, at 990,646 to 990,963 rsfS Position (kb) 989 990Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 989.076 kb on - strandat 989.092 kb on + strandat 989.092 kb on + strandat 989.753 kb on - strandat 989.789 kb on - strandat 989.891 kb on + strand, within cobCat 989.892 kb on - strand, within cobCat 989.926 kb on + strand, within cobCat 990.233 kb on + strand, within cobCat 990.233 kb on + strand, within cobCat 990.233 kb on + strand, within cobCat 990.234 kb on - strand, within cobCat 990.234 kb on - strand, within cobCat 990.234 kb on - strand, within cobCat 990.275 kb on + strand, within cobCat 990.275 kb on + strand, within cobCat 990.320 kb on + strand, within cobCat 990.321 kb on - strand, within cobCat 990.323 kb on - strand, within cobCat 990.357 kb on - strandat 990.539 kb on + strandat 990.539 kb on + strandat 990.598 kb on + strandat 990.598 kb on + strandat 990.598 kb on + strandat 990.600 kb on + strandat 990.617 kb on + strandat 990.621 kb on + strandat 990.621 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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989,076 - -0.3
989,092 + +2.2
989,092 + +2.3
989,753 - -1.3
989,789 - -0.1
989,891 + cobC NIAGMN_05405 0.19 -0.2
989,892 - cobC NIAGMN_05405 0.19 -0.6
989,926 + cobC NIAGMN_05405 0.25 +2.3
990,233 + cobC NIAGMN_05405 0.75 +2.3
990,233 + cobC NIAGMN_05405 0.75 -1.8
990,233 + cobC NIAGMN_05405 0.75 +0.8
990,234 - cobC NIAGMN_05405 0.75 +0.8
990,234 - cobC NIAGMN_05405 0.75 -0.1
990,234 - cobC NIAGMN_05405 0.75 -3.2
990,275 + cobC NIAGMN_05405 0.82 -0.5
990,275 + cobC NIAGMN_05405 0.82 -0.2
990,320 + cobC NIAGMN_05405 0.89 +3.1
990,321 - cobC NIAGMN_05405 0.89 +0.1
990,323 - cobC NIAGMN_05405 0.90 -2.6
990,357 - +0.4
990,539 + +0.3
990,539 + -0.4
990,598 + +0.1
990,598 + +1.4
990,598 + +1.0
990,600 + +1.1
990,617 + -1.5
990,621 + -3.0
990,621 + -1.3

Or see this region's nucleotide sequence